Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3047 ATGCATCACCTATCTCGGATTTTTGACCACAGGAAGCAAACCAAGACCATGGATCGCAAGAACCCGCGGAGAAAGCCCAAGCTCGAGCGCCGCAACGCCCTCAAGTACTCCGAATACGACGCCGGATCGTCCACCTCCTCGGTAGAAGACGCGCTCTACACGCGCTCCATGGAGTTCTACGACCGCACCAGCTTCCGAATCGAGGGAGTCGAGGGCGAGTTCGATCGAATTTGCAGGAGTTTGGGCCTCTCGGGCCCAGAAGACTTTGCTATTCCCGCAGCAGCATGGGAAGCCATGAAGTTTCGTTCCTCTTCCGATATTCTCCCGAGACTGAAGCTCGACAACCTCGATATtccagaagaagaagaagaagaagaagaagaagaaccgaAGGTAAACGAGGAAGGTGAATTGAGTGAAGAATACGGAGATAAGGTTAGGGTTAGGGACGTAGATGATTCGAGCACTGGTATTAAGGGGGTTCGTCCACCGATGCTGAAGCCGCCGCCAGGGGCGAGGGTTCAGGTGGTGGATAGAGCGTGTTCCACGTGGGACCTTTTGAGGGAGTTGGCTCCGCAAGGGGAAGGGTTGCCGTTGAACCATTCCGAGGATGAGAGGGAAGTGGAAAGAGCACCCCTGGTGGAGAGAGAAATAGTGGAGAAGGAAGAAGGGGAAGATGGCAGAGCGAGTCCGAAaagggaagaggaagagaatgtGGATAATGCGGCGAGGATTGCGGAGATCGTGGCTGGGCTTTCGGAGTCGTGTTCGTTTTCCACGTCGAACGAAGATGATTCTTCTAGTAGTACCACGGACCCTAAGTCCGCTAGTATATCCCCCAACGGGAGAATCAGGCGCATTATTACCGCCGGAAGCTGGCAGAAGGGTGAGTTTTTGGGGGGTGGCTCGTTTGGCTCCGTTTATGAAGGGATTTCTGATAATGGATTCTTTTTTGCCGTAAAAGAAGTATCACTACTTGATCAAGGGAATCAGGGAAAGCAAAGTATCTATCAGTTGGAGCAGgAAATAGCACTTTTGAGTCAGTTTGAGCATGAGAATATTGTTCAATACTATGGCACAGAAATGGATGAATCAAAGCTATATATCTTTCTTGAGCTTGTAACCAAAGGTTCCCTTAGAAACCTCTATCAGAAGTATACTCTTCGAGATTCCCAAGTATGTGCCTATACAAGACAGATTCTGCATGGTTTGAAGTATCTTCATGATCGAAATGTGGTTCACAGGGATATAAAATGTGCAAATATATTGGTGGATGCTAGTGGATCTGTCAAGCTTGCAGATTTTGGATTGGCGAAGGCAACCAAGTTGAATGATGTTAAATCAATGAAGGGGACAGCATTCTGGATGGCCCCTGAGGTTGTAAAGGGAAAGAACCAAGGTTATGGGCTTCCAGCTGATATGTGGAGTCTGGGATGCACTGTACTGGAGATGTTAACAGGCCAACTTCCGTACTGTCATTTGGAATGTATGCAGGCATTATTTAGAATTGGAAAAGGTGAGCGACCTCCTATTCCTGACTCTCTTTCAAGAGATGCACGGGATTTTATCCTGCAGTGCCTTCAAGTTGATCCAAATGATCGTCCCACTGCTGCTCAACTTTTAAACCATTCATTTGTCCAAAGGCCACTTTCCCAGTCCTCCGGTTCTTCATTTCCTCATATTCAGGGCCGGAGGGATTAA 1701 0.4691 MHHLSRIFDHRKQTKTMDRKNPRRKPKLERRNALKYSEYDAGSSTSSVEDALYTRSMEFYDRTSFRIEGVEGEFDRICRSLGLSGPEDFAIPAAAWEAMKFRSSSDILPRLKLDNLDIPEEEEEEEEEEPKVNEEGELSEEYGDKVRVRDVDDSSTGIKGVRPPMLKPPPGARVQVVDRACSTWDLLRELAPQGEGLPLNHSEDEREVERAPLVEREIVEKEEGEDGRASPKREEEENVDNAARIAEIVAGLSESCSFSTSNEDDSSSSTTDPKSASISPNGRIRRIITAGSWQKGEFLGGGSFGSVYEGISDNGFFFAVKEVSLLDQGNQGKQSIYQLEQEIALLSQFEHENIVQYYGTEMDESKLYIFLELVTKGSLRNLYQKYTLRDSQVCAYTRQILHGLKYLHDRNVVHRDIKCANILVDASGSVKLADFGLAKATKLNDVKSMKGTAFWMAPEVVKGKNQGYGLPADMWSLGCTVLEMLTGQLPYCHLECMQALFRIGKGERPPIPDSLSRDARDFILQCLQVDPNDRPTAAQLLNHSFVQRPLSQSSGSSFPHIQGRRD 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3047 566 MobiDBLite consensus disorder prediction 118 135 - -
Ssu1g3047 566 ProSiteProfiles Protein kinase domain profile. 293 546 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g3047 566 MobiDBLite consensus disorder prediction 256 278 - -
Ssu1g3047 566 PANTHER MAP KINASE KINASE KINASE-LIKE PROTEIN 60 559 - -
Ssu1g3047 566 MobiDBLite consensus disorder prediction 1 40 - -
Ssu1g3047 566 MobiDBLite consensus disorder prediction 256 281 - -
Ssu1g3047 566 SMART serkin_6 293 546 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g3047 566 ProSitePatterns Protein kinases ATP-binding region signature. 299 321 IPR017441 GO:0005524
Ssu1g3047 566 MobiDBLite consensus disorder prediction 116 173 - -
Ssu1g3047 566 ProSitePatterns Serine/Threonine protein kinases active-site signature. 412 424 IPR008271 GO:0004672|GO:0006468
Ssu1g3047 566 Gene3D Transferase(Phosphotransferase) domain 1 291 562 - -
Ssu1g3047 566 MobiDBLite consensus disorder prediction 218 239 - -
Ssu1g3047 566 Pfam Protein kinase domain 294 546 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g3047 566 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 60 559 - -
Ssu1g3047 566 MobiDBLite consensus disorder prediction 136 156 - -
Ssu1g3047 566 SUPERFAMILY Protein kinase-like (PK-like) 276 550 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3047 Ssu-Chr1 79772016 79778818 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3047 158 550 MAP Kinase Kinase Kinase AT4G08500 58.586 5.58e-146 432
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Ssu1g3047 Pkinase 9.7e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3047 K13414 - gmx:100819999 919.457
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3047 1 79772016 79778818 Ssu1g3047 1 79772016 79778818 ECH
Ssu6g2383 6 55070711 55102316 Ssu1g3047 1 79772016 79778818 PCT