Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3044 ATGGAATTGGCCTCAAAGGaaaggatagagagaaagaaacagAATAAGAGTGTGGCCAGAAACTCCAACACAAATAGCGTGGTGATCACAGTGTACACGGAATCAGTGACAACTCGCTCGAGAAGACTATCAGAGGATCCCACGAAGAAAACAAAGGCACACCCACATTTCAAGTCAAATGGCATCGCAGGAACACAGGGCTATGATCGTCGGGCTCTGCTTCTTGCTCACTCTCGAGAGCTTAGAAATGCAGCGTCAGAAAATGTTCCATTGCCCACCAATCAGTCACCGCCTAAAACTAAAAGCAAGGGTATATGGTTAACTCAACTGGTTCGAATCTACTCGTGCTCCTCCTCAACCCAAATGCCTCCAAGCTCAACGCCAGCGGAGGAGAGACTTATGACAAAGTCAACGTCGTCGTTTGTTGTGGTTGTCATGGGCCTTCCCCAAGACTACTCCGTCCTCGATCTCAAGTCCCGATTCGAGATCTATAGCGCCATCTCCTGCATTTGCATCGATTGTGATGTCATCTGCTACATTTCCTACCAAAGCAAGGACTCCATCGACACCACTGTCGTCACTAGCCTCCACCCCTCCTTCGAAATCATTTTCAACTCCAAAAAGGTGcttccttttccctttttctcaCCTAAGGCTTCGAAACTCCCATTTTGA 675 0.4519 MELASKERIERKKQNKSVARNSNTNSVVITVYTESVTTRSRRLSEDPTKKTKAHPHFKSNGIAGTQGYDRRALLLAHSRELRNAASENVPLPTNQSPPKTKSKGIWLTQLVRIYSCSSSTQMPPSSTPAEERLMTKSTSSFVVVVMGLPQDYSVLDLKSRFEIYSAISCICIDCDVICYISYQSKDSIDTTVVTSLHPSFEIIFNSKKVLPFPFFSPKASKLPF 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3044 224 SUPERFAMILY RNA-binding domain, RBD 137 189 IPR035979 GO:0003676
Ssu1g3044 224 MobiDBLite consensus disorder prediction 1 17 - -
Ssu1g3044 224 MobiDBLite consensus disorder prediction 39 53 - -
Ssu1g3044 224 MobiDBLite consensus disorder prediction 35 62 - -
Ssu1g3044 224 MobiDBLite consensus disorder prediction 1 21 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3044 Ssu-Chr1 79724140 79726352 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3044 124 209 Homeobox Transcription Factor Family AT1G27050 44.944 6.31e-16 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3044 - - lang:109327926 97.8265