Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3043 ATGGCGGCTTCTGTCGACCAGCGTCCGTACACTGGCCTCCAACACGGCGTCGTTCGGGCCTTCAAGCCAAGCCCGGACGTCACGCGTCCCAAGAAGCTACCCCATCCACCACCGCTCTCGGATTCCTCAAGCGACGACGAAGACGACGCCACTTTGAAGGACCTGATTCGTAAGTCAAGCGCGGAAGTTGAATCCTCCATCTTCGACCCGCGCGACGACGGAACCTCCGACCACTGGATCCAACGGAACGCTTCCATGGTCCGTCTAACGGGGAAGCACCCCTTCAACTCCGAGCCACCCCTCCCTCGCCTCATGCACCACGGCTTCATCACCCCCGTTCCCCTCCACTACGTCCGCAACCACGGGCCCGTTCCCCGGGCCCGCTGGGAGGACTGGACCGTCGAGGTCACGGGCCTGGTCACGCGGCCCACCCGGTTCACCATGGACCAGCTGGTCCGCGACTTCCCCAGCCGCGAGTTCCCCGCTACCCTCGTCTGCGCCGGGAACCGCCGCAAGGAACAGAACATGGTGAAACAGAGCATCGGCTTCAACTGGGGCGCCGCCGCCATCTCCACTTCGGTGTGGCGCGGTGTACAGTTGCGGAGCCTGCTCAAGCGGTGCGGGATCTATAGCCGCACCAAGGGCGCGCTCCACGTGTGCTTCGAAGGCGTCGAGGACCTGCCCGGTGGCGGTGGGTCCAAGTACGGGACCAGTATCATGCGGGAGATTGCATTGGATCCCTCCCGCGACATCATCATTGCTTACATGCAAAACGGGGAGCTTTTGACGCCGGATCATGGGTTCCCCGTTAGGATGATAATACCGGGTTTCATTGGAGGCCGCATGGTGAAATGGTTGAAGCGCATCATTGTCACTACTCAGCAATCTGATAGTTATTACCATTACAAGGACAACAGAGTACTACCATCTCACGTTGATGCTGAACTTGCCAATGCAGAAGcTTGGTGGTACAAGCCAGAGTATATTATCAACGAGCTTAACATAAACTCCGTGATAACCACGCCGTGCCACGATGAGATCTTACCCATCAACTCATGGTCTACTCAGAGGCCTTATGTGCTCAGAGGCTACGCATATTCCGGGGGTGGGAGAAAGGTAACACGTGTTGAGGTAACCCTGGACGGTGGTGAAACGTGGCAAGTGTGCACGCTGGACTGTCCGGAGAAACCCAACAAATATGGAAAGTACTGGTGTTGGTGTTTCTGGTCCTTGGAGGTAGAGGTGTTGGACCTGCTTGGAGCCAAGGAGATTGCGGTGCGCGCTTGGGACGAGGCCCTCAACACCCAGCCTGAGAAGCTCAATTGGAATGTTATGGGCATGATGAACAACTGCTGGTTCAGAGTGAAAACAAACGTGTGCAAGGCCCACAAAGGTGAGATTGGTATAGTGTTCGAGCACCCCACCCAACCAGGCAACCAATCTGGCGGCTGGATGGCCAAACAAAAACACCTGGAGAAATCATCAGAGTCCAACCCAGCCCTCAAGAAGAGTGTCTCCTCCCCGTTCATGAACACCACCTCAAAAACGTACTCCATGTCCGAAGTGAGAAGGCACTGCAACCCCAATTCGGCGTGGATCGTCGTCGATGGCCACGTCTACGATTGCACCCGCTTCCTCAAAGACCACCCCGGCGGCACAGACAGCATCCTCATCAACGCCGGCACCGACTGCACGGAGGAGTTCGAAGCCATCCACTCCGACAAAGCCAAGAAAATGCTCGAGGAGTACCGAATCGGCGAGCTCATGACCGCCGGCTACTCCTCTGATTCTTCATCGCCAAATAGCTCCGTGCATGGCAATTCCGACACCACCCATTTGGCCCCCATCAAGGAAGTGGCCCTTAACCCACGCGAAAAAATCCCATGCAAGCTCCTCTCCAAAACTTCCATCTCTCACGACGTTAGGCTCTTCCGCTTCGCGTTGCCCTCCGAGGACCAACTCATGGGTTTGCCGGTTGGGAAGCACATATTCTTATGTGCCACCGTCGACGAGAAGCTGTGCATGCGAGCCTACACTCCCACAAGCAGCGTCGATGAAGTGGGCTACTTCGATCTCGTCGTCAAGGTTTACTTCAGAGGCGTGCACCCCAAGTTCCCCAACGGTGGGCTCATGTCTCAACATTTGGACTCGCTGCCCGTTGGCGCAGTCTTGGACGTGAAAGGCCCACTGGGCCACATCGAATACACCGGCAGAGGAAACTTCCTGGTTCGTGGGAAACCAAAGTTTGCCAAGAGGCTAGCCATGTTGGCTGGTGGCACCGGGATCACCCCCATTTACCAAGTGGTTCAAGCGATTCTCAAGGACCCGGAGGACCGCACCGAAATGCATGTGGTATACGCGAACCGAACCGAGGATGATATCTTGCTGAGGGAAGAGCTCGATGAGTGGGCTAAGAAGCATGACAGGTTCAAGGTGTGGTACGTGGTACAAGAAAGTATAAGAGAAGGGTGGGAATACAGCATAGGGTTCATCACGGAAAGTATCCTGATGGAGCACGTTCCACGTGCATCTCCCGATACCTTGGCGTTGACCTGTGGACCACCACCCATGATTCAGTTCGCAGTGCAGCCGAATTTGGAGAAGTTGGGCTACGATATCGAGAACAACTTGCTCGTGTTTTAG 2643 0.5607 MAASVDQRPYTGLQHGVVRAFKPSPDVTRPKKLPHPPPLSDSSSDDEDDATLKDLIRKSSAEVESSIFDPRDDGTSDHWIQRNASMVRLTGKHPFNSEPPLPRLMHHGFITPVPLHYVRNHGPVPRARWEDWTVEVTGLVTRPTRFTMDQLVRDFPSREFPATLVCAGNRRKEQNMVKQSIGFNWGAAAISTSVWRGVQLRSLLKRCGIYSRTKGALHVCFEGVEDLPGGGGSKYGTSIMREIALDPSRDIIIAYMQNGELLTPDHGFPVRMIIPGFIGGRMVKWLKRIIVTTQQSDSYYHYKDNRVLPSHVDAELANAEAWWYKPEYIINELNINSVITTPCHDEILPINSWSTQRPYVLRGYAYSGGGRKVTRVEVTLDGGETWQVCTLDCPEKPNKYGKYWCWCFWSLEVEVLDLLGAKEIAVRAWDEALNTQPEKLNWNVMGMMNNCWFRVKTNVCKAHKGEIGIVFEHPTQPGNQSGGWMAKQKHLEKSSESNPALKKSVSSPFMNTTSKTYSMSEVRRHCNPNSAWIVVDGHVYDCTRFLKDHPGGTDSILINAGTDCTEEFEAIHSDKAKKMLEEYRIGELMTAGYSSDSSSPNSSVHGNSDTTHLAPIKEVALNPREKIPCKLLSKTSISHDVRLFRFALPSEDQLMGLPVGKHIFLCATVDEKLCMRAYTPTSSVDEVGYFDLVVKVYFRGVHPKFPNGGLMSQHLDSLPVGAVLDVKGPLGHIEYTGRGNFLVRGKPKFAKRLAMLAGGTGITPIYQVVQAILKDPEDRTEMHVVYANRTEDDILLREELDEWAKKHDRFKVWYVVQESIREGWEYSIGFITESILMEHVPRASPDTLALTCGPPPMIQFAVQPNLEKLGYDIENNLLVF 880
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3043 880 PRINTS Cytochrome B5 reductase signature 676 683 - -
Ssu1g3043 880 PRINTS Cytochrome B5 reductase signature 721 735 - -
Ssu1g3043 880 PRINTS Cytochrome B5 reductase signature 792 803 - -
Ssu1g3043 880 PRINTS Cytochrome B5 reductase signature 754 773 - -
Ssu1g3043 880 PRINTS Cytochrome B5 reductase signature 848 856 - -
Ssu1g3043 880 PRINTS Cytochrome B5 reductase signature 655 666 - -
Ssu1g3043 880 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 624 736 IPR017927 GO:0016491
Ssu1g3043 880 MobiDBLite consensus disorder prediction 1 52 - -
Ssu1g3043 880 Gene3D - 71 322 IPR036374 -
Ssu1g3043 880 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 545 552 IPR018506 GO:0020037
Ssu1g3043 880 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 754 773 IPR001709 GO:0016491
Ssu1g3043 880 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 676 683 IPR001709 GO:0016491
Ssu1g3043 880 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 548 558 IPR001709 GO:0016491
Ssu1g3043 880 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 792 803 IPR001709 GO:0016491
Ssu1g3043 880 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 780 789 IPR001709 GO:0016491
Ssu1g3043 880 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 848 856 IPR001709 GO:0016491
Ssu1g3043 880 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 824 840 IPR001709 GO:0016491
Ssu1g3043 880 PIRSF Nitr_rd_NADH 14 879 IPR012137 GO:0006809|GO:0042128|GO:0050464
Ssu1g3043 880 ProSitePatterns Eukaryotic molybdopterin oxidoreductases signature. 138 173 IPR022407 GO:0043546
Ssu1g3043 880 Pfam Cytochrome b5-like Heme/Steroid binding domain 519 588 IPR001199 -
Ssu1g3043 880 PRINTS Cytochrome B5 signature 549 563 IPR001199 -
Ssu1g3043 880 PRINTS Cytochrome B5 signature 576 588 IPR001199 -
Ssu1g3043 880 PRINTS Cytochrome B5 signature 539 549 IPR001199 -
Ssu1g3043 880 PRINTS Cytochrome B5 signature 564 571 IPR001199 -
Ssu1g3043 880 SUPERFAMILY Riboflavin synthase domain-like 619 736 IPR017938 -
Ssu1g3043 880 CDD cyt_b5_reduct_like 629 875 - -
Ssu1g3043 880 Pfam Oxidoreductase molybdopterin binding domain 121 300 IPR000572 -
Ssu1g3043 880 PANTHER NITRATE REDUCTASE 47 880 - -
Ssu1g3043 880 PRINTS Eukaryotic molybdopterin domain signature 173 185 IPR008335 GO:0016491
Ssu1g3043 880 PRINTS Eukaryotic molybdopterin domain signature 375 387 IPR008335 GO:0016491
Ssu1g3043 880 PRINTS Eukaryotic molybdopterin domain signature 427 439 IPR008335 GO:0016491
Ssu1g3043 880 PRINTS Eukaryotic molybdopterin domain signature 263 276 IPR008335 GO:0016491
Ssu1g3043 880 PRINTS Eukaryotic molybdopterin domain signature 440 453 IPR008335 GO:0016491
Ssu1g3043 880 PRINTS Eukaryotic molybdopterin domain signature 246 262 IPR008335 GO:0016491
Ssu1g3043 880 PRINTS Eukaryotic molybdopterin domain signature 109 125 IPR008335 GO:0016491
Ssu1g3043 880 PRINTS Eukaryotic molybdopterin domain signature 361 375 IPR008335 GO:0016491
Ssu1g3043 880 PRINTS Eukaryotic molybdopterin domain signature 87 101 IPR008335 GO:0016491
Ssu1g3043 880 PRINTS Eukaryotic molybdopterin domain signature 162 173 IPR008335 GO:0016491
Ssu1g3043 880 PRINTS Eukaryotic molybdopterin domain signature 279 292 IPR008335 GO:0016491
Ssu1g3043 880 PRINTS Eukaryotic molybdopterin domain signature 188 203 IPR008335 GO:0016491
Ssu1g3043 880 PRINTS Eukaryotic molybdopterin domain signature 330 342 IPR008335 GO:0016491
Ssu1g3043 880 PRINTS Eukaryotic molybdopterin domain signature 402 412 IPR008335 GO:0016491
Ssu1g3043 880 SUPERFAMILY Oxidoreductase molybdopterin-binding domain 70 330 IPR036374 -
Ssu1g3043 880 Gene3D - 510 591 IPR036400 -
Ssu1g3043 880 Pfam Oxidoreductase FAD-binding domain 629 735 IPR008333 -
Ssu1g3043 880 SUPERFAMILY E set domains 332 459 IPR014756 -
Ssu1g3043 880 SMART Cyt_b5_2 517 589 IPR001199 -
Ssu1g3043 880 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 724 875 IPR039261 -
Ssu1g3043 880 Gene3D - 332 507 - -
Ssu1g3043 880 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 512 592 IPR036400 -
Ssu1g3043 880 Gene3D Translation factors 616 730 - -
Ssu1g3043 880 Pfam Mo-co oxidoreductase dimerisation domain 328 459 IPR005066 GO:0016491|GO:0030151
Ssu1g3043 880 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 514 589 IPR001199 -
Ssu1g3043 880 Gene3D - 731 880 IPR039261 -
Ssu1g3043 880 CDD eukary_NR_Moco 72 457 - -
Ssu1g3043 880 PANTHER NADH-CYTOCHROME B5 REDUCTASE 47 880 IPR001834 GO:0016491
Ssu1g3043 880 Pfam Oxidoreductase NAD-binding domain 755 862 IPR001433 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3043 Ssu-Chr1 79692548 79698771 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3043 617 874 NADPH P450 reductases AT5G17770 39.080 4.92e-50 176
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3043 K10534 - gmx:732634 1614.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3043 1 79692548 79698771 Ssu1g3043 1 79692548 79698771 ECH