Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3039 ATGGAGGATTTGCAGAGTGTTCTGCAGGATCGTAACTTATCAGTTTCCACCGTCCCAGAAAAGGGTCGTTCTCTCTTCGCTACTAGGGATTTCTATCCAGGGGAGGTGATTATAAGTCAAGAGCCTTATGTTTGTGTTCCGAATAACTCCTCGGTCTCCGCCCAGAAAAGGTGCGACGGATGTTTCACTGCAACTAATGTCCTTAGCAGGTGCTCACGTTGCCAAGTTGCATACTATTGTGGAACCGCGTGTCAGAGGTCAGAGTGGAAGCTGCATCGTCTTGAGTGTGAGGCCATCTCGAGGCTGGACGAGGACAAGAGAAAATCTGTCACACCATCCATACGACTGATGGTGAGACTTTGTCTTCGGAGAAAGTTGCAAAATGATAAGATCATCCCAAGCACTGCTATGGACAACTACAACTTGGTGGAGGCATTAGTGGCTCACATCTCTGACATCACACAGGAGCAGCTGGTGCTTTATGCACAGATGGCTAATCTTGTAAACTCCATACTACAGTGGCCGgaaatcaatataaaagagATTGCAGAAAATTTTTCTAAGTTGGCATGTAATGCACATACCATTTGTGACAGTGAGTTGAGACCTGTGGGAACAGGATTGTATCCTGTTATTTCTATTATCAATCACAGTTGTTTGCCCAATTCTGTGTTGGTTTTTGAGGGAAAGTCAGCATTGGTACGTGCAGTGCAGCATATACCCACAGGTACCGAgGTACTGATAAGTTATATAGAAACCGCTGGAAGCACTATGACTCGACAGAAGGTTCTGAAAGAGCAGTACCTATTCACTTGTACATGTCCCCGCTGTTCTAAAGGAGGTCAGTATGATGATGTCCAAGAAAGTGCAATTCTAGAAGGATACAGATGCAAAAGTGAAAAATGCGGTGGTTTCTTGCTTCGTACAACTGGTGGGAAAGGCTTCCAATGCCAAGGTTGTGGACTAGTTAGGGACAAGGAGGAGGTAAAGAGAATTGCAACTGAAATTAAATTGCTATATGAAGAAGCTTCTAAGCCCTCTTCCACTTGCAattatcaagAAGCTATATCCATATATAAAAAGGTTGAGAAGCTGCAAACAGAACTCTATCATCCTTTATCAATCAACTTGATGCAAACTAGAGAGAAGATTTTGAAGTCATTAATGGAGTTGGAACACTGGACAGAAGCTTTAGCATATTGCAAATTGACCATACCATTCTATCAAAGAGTGTATCCAACTGTTCACCCTCTGCTTGGCTTGCAATATTATACTTGTGGAAAACTAGAATGGTATCTAGGAGACACAGCGGAAGCTGTTAAATCACTGACCAAGGCTGGGGATATACTACGGATTACTCATGGCACAAATACGCCTTTCATGAAGGACCTCTTGATGAAGTTGGAAGAAGCCCGTGCTGAAGCGTCTTACAAATTGTCCTCTAAAGCTTGTCTAGTAGAATAA 1464 0.4262 MEDLQSVLQDRNLSVSTVPEKGRSLFATRDFYPGEVIISQEPYVCVPNNSSVSAQKRCDGCFTATNVLSRCSRCQVAYYCGTACQRSEWKLHRLECEAISRLDEDKRKSVTPSIRLMVRLCLRRKLQNDKIIPSTAMDNYNLVEALVAHISDITQEQLVLYAQMANLVNSILQWPEINIKEIAENFSKLACNAHTICDSELRPVGTGLYPVISIINHSCLPNSVLVFEGKSALVRAVQHIPTGTEVLISYIETAGSTMTRQKVLKEQYLFTCTCPRCSKGGQYDDVQESAILEGYRCKSEKCGGFLLRTTGGKGFQCQGCGLVRDKEEVKRIATEIKLLYEEASKPSSTCNYQEAISIYKKVEKLQTELYHPLSINLMQTREKILKSLMELEHWTEALAYCKLTIPFYQRVYPTVHPLLGLQYYTCGKLEWYLGDTAEAVKSLTKAGDILRITHGTNTPFMKDLLMKLEEARAEASYKLSSKACLVE 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3039 487 ProSiteProfiles Zinc finger MYND-type profile. 58 96 IPR002893 -
Ssu1g3039 487 SUPERFAMILY SET domain 10 250 IPR046341 -
Ssu1g3039 487 Pfam MYND finger 58 96 IPR002893 -
Ssu1g3039 487 SMART set_7 11 257 IPR001214 GO:0005515
Ssu1g3039 487 Pfam SET domain 22 250 IPR001214 GO:0005515
Ssu1g3039 487 ProSitePatterns Zinc finger MYND-type signature. 58 96 IPR002893 -
Ssu1g3039 487 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ASHR1 1 475 - -
Ssu1g3039 487 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SMYD 1 475 - -
Ssu1g3039 487 Gene3D Tetratricopeptide repeat domain 404 482 IPR011990 GO:0005515
Ssu1g3039 487 Gene3D - 57 108 - -
Ssu1g3039 487 SUPERFAMILY TPR-like 339 449 IPR011990 GO:0005515
Ssu1g3039 487 Gene3D SET domain 24 277 IPR046341 -
Ssu1g3039 487 Gene3D - 109 193 - -
Ssu1g3039 487 ProSiteProfiles SET domain profile. 11 251 IPR001214 GO:0005515
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Ssu1g3039 SET 1.5e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3039 K11426 - gmx:100789518 880.937