Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3038 ATGACTGATGGGGTTGTGAAATCGGTTAATATTTCCGTGAAAGAAACCGATAGAATGTCGGTTGATCGGGCAGAAGCTGAAGTTCAAACTTCTGGTTCTTGTATCAATGATGCAGAGTTGGCATCTAAGGAGAGCAATCGTTCTAAGGAGCAACAACAAGGGGGTGTGTTAAAAGAAACTGGCAATTCAAACTATACTTCTTGTGATGATGGGAAAGGGAAAGAGGCTGTGGATGTTGCCACCGTACAACCGCATGCTCCAATGCCTGCAACCTTGTCTTCAGATGTGAAGCTGGAGTCTTCTAAGGTAGAAAAACGGGAGAAGGCTGCAAGTTGTAAAGGGGCATCAGCTGCCCGGAAAAGGACTTATGACCCTGATTTGTTTTTCAAAGTCAATGGCAAGCTTTATCAGCGTCTTGGCAAGATAGGTAGTGGTGGAAGCAGTGAGGTGCACAAGGTGATTTCATCGGACTGTAGGATCTATGCACTTAAAAAGATCAAGCTCAAGGGTCGTGATTATGCTACTGCATATGGGTTTTGTCAAGAGATTGAATATCTAAATAGGCTGAAGGGAAAGGATAACATCATACAGCTTATAGATTTTGAGGTGACTGACAAGGCTTTGCTGGAGGAAGTTATGAAAGGCTCCTTCAGTAATAAAGATGGCTGGGTCAAGGATGATGGATGTATATACATGGTACTTGAATATGGGGAAATCGATTTGGCTCACATGTTGTCTCAGAAGTGGAAGGAACTGGATGGAAACAACCAGACTATAGATGAGAATTGGCTTCGATTTTATTGGCAGCAAATTCTTCTTGCTGTCAGCACTATTCACGAGGAACGTATTGTGCACTCAGACTTGAAGCCAGCTAACTTCCTCCTTGTCAAAGGTTCCCTAAAACTGATTGATTTTGGTATAGCCAAAGCAATAATGAATGACACAACTAACATCCAGCGGGATTCACAGGTGGGCACTCTAAGTTACATGTCGCCAGAGGCATTTATGTGTAATGAGACTGATGCAAATGGAAACATCATAAAGTGTGGTCGGCCATCAGATATCTGGTCCCTGGGCTGCATCCTTTATCAAATGGTATATGGGAGAACACCTTTTTCTGATTACAAGACATTTTGGGCCAAATTCAAAGTTATAACAGATCCAAATCATGAGATTACGTATGAACCAGTTTCAAACCCATGGCTTTTGGATCTTATGAAGAGGTGTCTAGCATGGGATCGCAATCAAAGGTGGAGAATCCCTCAGCTACTCCAACATCCTTTTCTTGTTCCTCGTGTACCATGTCATCCATCTACGCCCCAAGATCATAGCTGTAAATTTCTACAACTTATTTCTGAAACTTGTACATATGACCCAGAAGCATCCCAACTGTGTAGTCGGCTCCAACGGCTTCTTAGTGATCCGGTTGAGAAAACATCTCACTCACTAAATTCACGAGAACAACAACTAAAACTGCTGTCCCAAATGTCAGAACTCTGTATTCAGCTGCACGAACTTTTGACAAATACTGAAAACAAGTAG 1542 0.4248 MTDGVVKSVNISVKETDRMSVDRAEAEVQTSGSCINDAELASKESNRSKEQQQGGVLKETGNSNYTSCDDGKGKEAVDVATVQPHAPMPATLSSDVKLESSKVEKREKAASCKGASAARKRTYDPDLFFKVNGKLYQRLGKIGSGGSSEVHKVISSDCRIYALKKIKLKGRDYATAYGFCQEIEYLNRLKGKDNIIQLIDFEVTDKALLEEVMKGSFSNKDGWVKDDGCIYMVLEYGEIDLAHMLSQKWKELDGNNQTIDENWLRFYWQQILLAVSTIHEERIVHSDLKPANFLLVKGSLKLIDFGIAKAIMNDTTNIQRDSQVGTLSYMSPEAFMCNETDANGNIIKCGRPSDIWSLGCILYQMVYGRTPFSDYKTFWAKFKVITDPNHEITYEPVSNPWLLDLMKRCLAWDRNQRWRIPQLLQHPFLVPRVPCHPSTPQDHSCKFLQLISETCTYDPEASQLCSRLQRLLSDPVEKTSHSLNSREQQLKLLSQMSELCIQLHELLTNTENK 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3038 513 MobiDBLite consensus disorder prediction 1 72 - -
Ssu1g3038 513 SMART serkin_6 136 429 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g3038 513 ProSitePatterns Serine/Threonine protein kinases active-site signature. 283 295 IPR008271 GO:0004672|GO:0006468
Ssu1g3038 513 ProSiteProfiles Protein kinase domain profile. 136 429 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g3038 513 SUPERFAMILY Protein kinase-like (PK-like) 130 441 IPR011009 -
Ssu1g3038 513 PANTHER DUAL SPECIFICITY PROTEIN KINASE TTK 29 484 IPR027084 GO:0004712|GO:0007093|GO:0051304
Ssu1g3038 513 ProSitePatterns Protein kinases ATP-binding region signature. 142 164 IPR017441 GO:0005524
Ssu1g3038 513 PANTHER MIXED LINEAGE PROTEIN KINASE 29 484 - -
Ssu1g3038 513 MobiDBLite consensus disorder prediction 1 15 - -
Ssu1g3038 513 Pfam Protein kinase domain 136 429 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g3038 513 Gene3D Phosphorylase Kinase; domain 1 129 215 - -
Ssu1g3038 513 Gene3D Transferase(Phosphotransferase) domain 1 250 433 - -
Ssu1g3038 513 MobiDBLite consensus disorder prediction 26 69 - -
Ssu1g3038 513 CDD PKc_Mps1 134 429 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3038 Ssu-Chr1 79493029 79496365 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3038 142 430 MAP Kinase Kinase Kinase AT4G08470 28.571 1.06e-24 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TTK Ssu1g3038 Pkinase 8e-56 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3038 K08866 - gmx:100788990 929.472
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3038 1 79493029 79496365 Ssu1g3038 1 79493029 79496365 ECH