Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3032 ATGGCCGAGAGCCGGAGATCCACGGGCACCGTGAAGTGGTTCAACGCGCAGAAGGGTTTCGGATTCATAACTCCCGAAGACGGCACCGAGGATCTCTTCGTGCACTTCACTTCCATCCGATCCGACGGCTACCGCTCCCTGTCGGAGGGCCAGTCCGTCGAGTTCCTCGTCGACTACGGCGACGACGGCCGGACCATGGCCGTCGACGTCACCTCCACCGTTAGATCTCGTCGTACGGGAGGGTTCCACCGCGGCGGGGGGAGGGGCAGAGGAGGGGGACGCTACGGCGGCGGGGAAGGCAGCGGCGGAGGGATCGGGCGGAGAGGAGGGGGTTACGGCGGTGGTGGAGGTCCTGAGTGTTATAATTGCGGAAGAATAGGTCACTTGGCGAGGGATTGTTACCAGGGAcagggtggtggtggtggtgatggtaggaATCGGAGACGCGGCGGAGGAGGTGGAGGAGGAGGGTGTTTTAACTGTGGAGAGGAAGGGCATTTTGCGAGGGAATGTCCGATGTTGGGAAATGAGTGA 534 0.5899 MAESRRSTGTVKWFNAQKGFGFITPEDGTEDLFVHFTSIRSDGYRSLSEGQSVEFLVDYGDDGRTMAVDVTSTVRSRRTGGFHRGGGRGRGGGRYGGGEGSGGGIGRRGGGYGGGGGPECYNCGRIGHLARDCYQGQGGGGGDGRNRRRGGGGGGGGCFNCGEEGHFARECPMLGNE 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3032 177 SMART c2hcfinal6 119 135 IPR001878 GO:0003676|GO:0008270
Ssu1g3032 177 SMART c2hcfinal6 157 173 IPR001878 GO:0003676|GO:0008270
Ssu1g3032 177 Pfam 'Cold-shock' DNA-binding domain 8 72 IPR002059 GO:0003676
Ssu1g3032 177 PANTHER COLD SHOCK DOMAIN PROTEIN 2 1 172 - -
Ssu1g3032 177 ProSiteProfiles Cold-shock (CSD) domain profile. 6 72 IPR002059 GO:0003676
Ssu1g3032 177 PRINTS Cold shock protein signature 30 39 IPR002059 GO:0003676
Ssu1g3032 177 PRINTS Cold shock protein signature 45 63 IPR002059 GO:0003676
Ssu1g3032 177 PRINTS Cold shock protein signature 9 24 IPR002059 GO:0003676
Ssu1g3032 177 Gene3D - 97 141 - -
Ssu1g3032 177 Gene3D - 145 177 - -
Ssu1g3032 177 SMART csp_8 8 73 IPR011129 GO:0003676
Ssu1g3032 177 Pfam Zinc knuckle 119 133 IPR001878 GO:0003676|GO:0008270
Ssu1g3032 177 Pfam Zinc knuckle 157 172 IPR001878 GO:0003676|GO:0008270
Ssu1g3032 177 ProSiteProfiles Zinc finger CCHC-type profile. 120 133 IPR001878 GO:0003676|GO:0008270
Ssu1g3032 177 SUPERFAMILY Nucleic acid-binding proteins 5 71 IPR012340 -
Ssu1g3032 177 SUPERFAMILY Retrovirus zinc finger-like domains 109 173 IPR036875 GO:0003676|GO:0008270
Ssu1g3032 177 CDD CSP_CDS 8 71 IPR002059 GO:0003676
Ssu1g3032 177 ProSitePatterns Cold-shock (CSD) domain signature. 20 39 IPR019844 -
Ssu1g3032 177 Gene3D - 1 71 IPR012340 -
Ssu1g3032 177 MobiDBLite consensus disorder prediction 77 105 - -
Ssu1g3032 177 ProSiteProfiles Zinc finger CCHC-type profile. 158 172 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3032 Ssu-Chr1 79430240 79430773 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Ssu1g3032 CSD 1.7e-25 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3032 - - gmx:100815773 201.445