Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3028 ATGCAAGGGAAAAAAGACTTCTGCAGTGAGATTGCTGTTATTGGAAACATCCACCATGTTAACTTGGTCAAACTGAAAGGCTTTTGTGCTCAAGGGAGACACCGCTTGTTGGTTTATGAGTACATGAACCGTGGATCCCTTGACCGCAACCTCTTCGGTGGTGGACCCGTTTTGGAATGGCAAGAGAGGTTCGATGTGGCGCTTGGAACAGCACGTGGACTTGCGTACCTTCACAGTGGCTGTGAGCAAAAGGTTATCCATTGTGACATCAAACCCGAGAACATTCTCTTGCACGATCAGTTTCAAGCTAAGATATCTGACTTCGGACTCTCGAAACTCCTCAGCCCCGAACAGTCTGGTTTGTTCACAACAATGAGAGGCACCCGCGGTTACCTTGCTCCAGAGTGGCTCACCAACTCTGCCATTACGGAAAAGACTGACGTGTATAGCTTCGGAATGGTACTTCTTGAACTTGTCAGTGGAAGGAAGAACTGTTATTTCAGGTCGAGAAGCCACAGCATGGATCATGAGAGCAACAGTGGTGGAGGCAATTCCTCAACTCATCAACACCGGGTTGCTTTATTTTCCGCTATTTGCGTTGGAGATGCATGA 612 0.4788 MQGKKDFCSEIAVIGNIHHVNLVKLKGFCAQGRHRLLVYEYMNRGSLDRNLFGGGPVLEWQERFDVALGTARGLAYLHSGCEQKVIHCDIKPENILLHDQFQAKISDFGLSKLLSPEQSGLFTTMRGTRGYLAPEWLTNSAITEKTDVYSFGMVLLELVSGRKNCYFRSRSHSMDHESNSGGGNSSTHQHRVALFSAICVGDA 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3028 203 Pfam Protein kinase domain 5 175 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g3028 203 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 2 186 - -
Ssu1g3028 203 SUPERFAMILY Protein kinase-like (PK-like) 3 170 IPR011009 -
Ssu1g3028 203 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-KINASE 2 186 - -
Ssu1g3028 203 Gene3D Transferase(Phosphotransferase) domain 1 43 192 - -
Ssu1g3028 203 ProSiteProfiles Protein kinase domain profile. 1 203 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g3028 203 SMART serkin_6 1 203 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g3028 203 Gene3D Phosphorylase Kinase; domain 1 1 42 - -
Ssu1g3028 203 ProSitePatterns Serine/Threonine protein kinases active-site signature. 85 97 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3028 Ssu-Chr1 79353938 79354549 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3028 2 165 Receptor kinase-like Gene Family AT5G20050 46.286 2.32e-53 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Ssu1g3028 Pkinase 1.4e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3028 - - aprc:113853223 368.622
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3028 1 79353938 79354549 Ssu1g3028 1 79353938 79354549 ECH