Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3026 ATGGAAATAGACATGGACATGGATGCCATACATGATCTCGACTTCTCCGGATACAGCACCATCACCAACAACACCCCCACCTCCGACGACGACTACGGTTGCAACTGGAACCACTGGTCCCCCGTCGTCAACTGGGACGCCTTCGCCGGCGCCCACGACGATTTCCACCACCTCATCGACTCCATGATGTGCGACGGCGCCGCCGCGGAGCATCTCAGCCCCGACGACCAGGGCGCTAGCAACTCCCCCTCCGCCTCCATCACGGAGGAGGACGTCGACGGCGAGGAAGAAACCGCCGGCGGCGACGATTCCAAGGGCCTGAGACTCGTCCATCTGCTGATGGCCGCCGCGGAGGCCCTCACCGGCGCCACCAAGAGCCGCGACCTGGCTCGAGTGATATTGGTTCGGCTCAAGGAGTTGGTGTCCCACGCGCACGGCTCCAACATGGAGAGGCTCGCCGCGTACTTCACCGACGCGCTGCAGGGCCTGCTGGATGGCGCCGGGGGTGCGCACAATAACAGCAACAAGCACCATCATTATTACGTCACGTGCGGGTCCCACCACCCTCGCGAcgatcatcatcatcaaaacGACATCCTCGCGGCGTTCCAACTGCTTCAGGACATGTCCCCCTACGTCAAGTTCGGACACTTCACCGCCAACCAGGCCATCCTCGAGGCCGTGGCCCACGAGCGCCGAGTCCACATCGTCGACTACGACGTCATGGAAGGGGTCCAGTGGGCCTCCCTCATGCAGGCCCTCGCCGACTACAGCAAAACCGGCCCACCCGGCCCGCACCTAAGAATCACCGCATTGTCCCGCACCGGCACCGGACGGAGGTCCATCTCCACCGTGCAGGAAACCGGCCGGCGGTTGGCGGCGTTCGCCGCCTCTCTCAACCAGCCTTTCTCTTTCCACCAGTGCAGGTTGGACTCCGACGAAACGTTTCGTCCTTCGTCGCTAAAGCTGGTTCGCGGAGAGGCTTTGGTTTTTAACTGCATGCTAAACTTACCGCACCTTAGTTACCGTGCGCCCGATTCGGTTGCGTCGTTTTTGAGCGGAGCGAAGGCGTTGAAGCCGAGGCTGGTGACGCTagtggaggaggaggtggggtCCGCTGCTGGAGGGTTCGTGGGGCGGTTTATGGATTCGCTGCATCACTACTCGGCGGTGTTTGACTCAATGGAGGCTGGGTTTCCGATGCAGGGCCGGGCCAGGGCCTTTGTGGAGCGGGTTTTCTTGGGCCCACGGATAGTGGGCTCGTTGGCCCGGATATACCGGACGGGGGAAGAGGAGGAGAGAGGGTCGTGGGGGGAGTGGTTGGGTGCGGCGGGGTTCAGGGGGGTTCCCATGAGCTTCGCCAATCATTGCCAAGCGAAGCTGTTGCTGGGTCTTTTCAACGACGGGTATAGGGTGGAGGAGTTGTGGACTAATAAGTTGGTGTTGGATTGGAAATCGAGGCGCTTGCTTTCTGCCTCGCTTTGGACTTCTTCCTCGGACTcggattaa 1509 0.5971 MEIDMDMDAIHDLDFSGYSTITNNTPTSDDDYGCNWNHWSPVVNWDAFAGAHDDFHHLIDSMMCDGAAAEHLSPDDQGASNSPSASITEEDVDGEEETAGGDDSKGLRLVHLLMAAAEALTGATKSRDLARVILVRLKELVSHAHGSNMERLAAYFTDALQGLLDGAGGAHNNSNKHHHYYVTCGSHHPRDDHHHQNDILAAFQLLQDMSPYVKFGHFTANQAILEAVAHERRVHIVDYDVMEGVQWASLMQALADYSKTGPPGPHLRITALSRTGTGRRSISTVQETGRRLAAFAASLNQPFSFHQCRLDSDETFRPSSLKLVRGEALVFNCMLNLPHLSYRAPDSVASFLSGAKALKPRLVTLVEEEVGSAAGGFVGRFMDSLHHYSAVFDSMEAGFPMQGRARAFVERVFLGPRIVGSLARIYRTGEEEERGSWGEWLGAAGFRGVPMSFANHCQAKLLLGLFNDGYRVEELWTNKLVLDWKSRRLLSASLWTSSSDSD 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3026 502 ProSiteProfiles GRAS family profile. 100 496 IPR005202 -
Ssu1g3026 502 MobiDBLite consensus disorder prediction 69 103 - -
Ssu1g3026 502 Pfam GRAS domain family 109 496 IPR005202 -
Ssu1g3026 502 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 4 496 IPR005202 -
Ssu1g3026 502 PANTHER SCARECROW-LIKE PROTEIN 26 4 496 IPR030028 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3026 Ssu-Chr1 79283265 79284773 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3026 76 497 GRAS Transcription Factor Family AT5G41920 35.814 3.75e-58 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Ssu1g3026 GRAS 1.8e-99 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3026 - - gmx:100782300 831.247