Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3020 ATGTCGTTGAGTCCTCCGAGAGAGAGAAACAATGAGCAACCGAGGACGTTCCAGCTGTACTGGTGCTTCCAGTGCAACCGCACGGTCCGCGTCGCACCCGATAATAACCCCTCCGAAGTCGCGTGTCCGCGCTGCTTGGGCCAATTCATCTGCGAAATAAACATGCCGAGGCCAAGACTGGTGGTGGATTTCACCACCCCGGACCCTTCCCCAGACGCGCGTTTGCTCGAAGCGCTTTCTCTCATGATGGACCCACCCATACGTCGCTTCCCGGGTCTCCTCCAACCCGAAGAGGTTCCCGTGCTTCAACGAAGGCGCCTCCCCCGACGCCGCCAACCCGAACCCGAACCCGGGAATCACCGTCCTCGTACATGGATTGTTTTTCAGCCCATGGACCCATCCAACCCTTTCGAGCCCATTAACATCACTCCAGGCCGGCACGGCGCGGGCCCAATCCCGCGCGGCGTGGAACCGCGAGATTACTTCTTCGGGCCAGGGCTGATCGAGCTGATCGAGCAGCTAACGGAGAACGACCGGCCGGGTCCGAGGCCGGCGCCGGAGAGAGTCATCGACGCGATTCCGACGGTGAAAATCGAGAGCGCGCATCTGAAGGAGAATTCTCAGTGTCCGGTTTGTCAGGAGGAATTCGAGGTGGGCGGAGAAGCGAGGGAGCTTCCGTGCAAACATATATATCACTCTGATTGCATTGTTCCGTGGCTGAGGCTCCACAATTCTTGCCCTGTGTGCAGGCACGAGGTGCCCGTGCCGTCTTCTCCTTCGGAGATTGATGAATGTGTTGACGAGGGCAGAGAAGGTAGGTTGCGGAGGTGCTTGAGGTGGACCCGTCGTCTTGCCTTGCGTTGGCCTTTCAATGCAAGGCATCGAACTCGACGGGTTCACCCTCAAGGAAATAATAATGTTGCTGCTGCTTCTTCAAGGGGACATTTCCCATTGGAGAACCATACACTAATCCCTCAAGCTAATCGGAGGCAGCACTACTCTTGCTGCATTCTTTAA 1017 0.5733 MSLSPPRERNNEQPRTFQLYWCFQCNRTVRVAPDNNPSEVACPRCLGQFICEINMPRPRLVVDFTTPDPSPDARLLEALSLMMDPPIRRFPGLLQPEEVPVLQRRRLPRRRQPEPEPGNHRPRTWIVFQPMDPSNPFEPINITPGRHGAGPIPRGVEPRDYFFGPGLIELIEQLTENDRPGPRPAPERVIDAIPTVKIESAHLKENSQCPVCQEEFEVGGEARELPCKHIYHSDCIVPWLRLHNSCPVCRHEVPVPSSPSEIDECVDEGREGRLRRCLRWTRRLALRWPFNARHRTRRVHPQGNNNVAAASSRGHFPLENHTLIPQANRRQHYSCCIL 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3020 338 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 11 267 - -
Ssu1g3020 338 Pfam Ring finger domain 208 250 IPR001841 -
Ssu1g3020 338 SMART ring_2 209 249 IPR001841 -
Ssu1g3020 338 MobiDBLite consensus disorder prediction 101 125 - -
Ssu1g3020 338 MobiDBLite consensus disorder prediction 102 118 - -
Ssu1g3020 338 CDD RING-H2_RNF126_like 208 250 - -
Ssu1g3020 338 Pfam zinc-ribbon 18 53 IPR039525 GO:0061630
Ssu1g3020 338 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 172 256 IPR013083 -
Ssu1g3020 338 ProSiteProfiles Zinc finger RING-type profile. 209 250 IPR001841 -
Ssu1g3020 338 SUPERFAMILY RING/U-box 189 256 - -
Ssu1g3020 338 PANTHER - 11 267 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3020 Ssu-Chr1 79192979 79194862 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3020 181 291 C3H Transcription Factor Family AT1G68180 44.444 1.30e-27 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3020 K11982 - gmx:100787399 458.373
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3020 1 79192979 79194862 Ssu1g3020 1 79192979 79194862 ECH