Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3018 ATGGTTAAGTCAGAGCACAAGATCAAAACAGAACCATCAAAGGCAATGCAGTCtttatcttcatcatcatcatcagcaTCAGTATCAGCATCATCAGCATCAGTATCAGAtagcaagaagaagaagtacAAGGGAGTGAGAATGAGGAGCTGGGGGTCATGGGTGTCTGAGATTCGAGCACCAAACCAGAAAACAAGAATATGGCTAGGCTCTTATTCAACCCCAGAGGCAGCTGCAAGAGCCTATGATGCTGCACTTCTGTGTCTTAAAGGCTCCTCAGCAAATCTTAACTTCCCTTTAAGCTCTTCACAATATATTCCTGGAGATGCTGTCATGTCCCCCAAATCAATCCAAAGAGTTGCTGCAGCTGCTGCGAATAGTTTCATCGACAATGCCACCGTTCCCCCGTCCCCACCTCCTCCCTCAACCTCATCATCGTCATTGGTCTCATCCAGCTCAATGGCCGCTTCTCCCTCGGATCAAATCGATGATGATGCCTCACTAATATCATCCTTTGAGGCCTACACTAGTTGTGATCAAGCAAATGGATCAATGGCTGTGATGGAACCTTGGTACACCTTTGGTGATGGTCTTCAATCCCCTAAGTATGCTGATCAGATGTTAAGTGGGGGTTTCTTTGATATTGATTCCTCCCATCTACTTGATGATCTATACGAAGAAAGTGACATTCGTTTGTGGAGCTTCTGCtga 711 0.4318 MVKSEHKIKTEPSKAMQSLSSSSSSASVSASSASVSDSKKKKYKGVRMRSWGSWVSEIRAPNQKTRIWLGSYSTPEAAARAYDAALLCLKGSSANLNFPLSSSQYIPGDAVMSPKSIQRVAAAAANSFIDNATVPPSPPPPSTSSSSLVSSSSMAASPSDQIDDDASLISSFEAYTSCDQANGSMAVMEPWYTFGDGLQSPKYADQMLSGGFFDIDSSHLLDDLYEESDIRLWSFC 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3018 236 MobiDBLite consensus disorder prediction 131 161 - -
Ssu1g3018 236 Gene3D AP2/ERF domain 41 101 IPR036955 GO:0003700|GO:0006355
Ssu1g3018 236 CDD AP2 41 101 IPR001471 GO:0003700|GO:0006355
Ssu1g3018 236 SUPERFAMILY DNA-binding domain 42 101 IPR016177 GO:0003677
Ssu1g3018 236 MobiDBLite consensus disorder prediction 1 43 - -
Ssu1g3018 236 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF014 18 236 - -
Ssu1g3018 236 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 18 236 - -
Ssu1g3018 236 MobiDBLite consensus disorder prediction 13 36 - -
Ssu1g3018 236 MobiDBLite consensus disorder prediction 144 161 - -
Ssu1g3018 236 SMART rav1_2 42 105 IPR001471 GO:0003700|GO:0006355
Ssu1g3018 236 ProSiteProfiles AP2/ERF domain profile. 42 99 IPR001471 GO:0003700|GO:0006355
Ssu1g3018 236 PRINTS Ethylene responsive element binding protein signature 43 54 IPR001471 GO:0003700|GO:0006355
Ssu1g3018 236 PRINTS Ethylene responsive element binding protein signature 65 81 IPR001471 GO:0003700|GO:0006355
Ssu1g3018 236 Pfam AP2 domain 42 91 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3018 Ssu-Chr1 79176159 79176869 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3018 1 235 AP2-EREBP Transcription Factor Family AT1G21910 48.800 1.05e-49 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Ssu1g3018 AP2 3.1e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3018 - - gmx:100819512 338.961
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3018 1 79176159 79176869 Ssu1g3018 1 79176159 79176869 ECH