Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3015 ATGAGTGCCGTAAAAGTGATTGGCAGATTAGGCCTACTTTTTAATAATGCAAAACCATACCTCTTAATGATTGGCTTGCAGTTTGGCATGGCCGGCAATTACATCTTCGGCAAAGATGTTCTTAACCGTGGTATGAGTCGTTTTGTGTTCATTGTGTACCGAAATGCTATGGCCACAATTGCCCTTGCCCCTTTCGCATTCTTTATTGAAAGGATAATAACCTTGTTAATTACATGGCTAATTTTGACCAGGCCAGTTTTTAATCAAAGCTTCACGTACTTGGGGATGAAGTATACTTCGGCTTCATTCGCATCTACTATTGTGAATGCTGTGCCCTCTATCACCTTTCTGCTTGCAGTCATCGTCCGGTTGGAGCGTCTAGAATTTAAGGAGGTTCGGAGTCAAGCCAAAGTGATTGGAACATTAGTAACCTTTGGAGGTGCTTTGCTAATGGCAATTTACAAAGGTCCTGCATTCGATCTTTTTCATTCTGGAAGCACAACCCACCACGAAAATGGAAGCCCCTCCTCTCACAACCACCAAACCTCTGGAGCTATTTATATACTAATGGGTTGTGTGGCTTTGTCgtctttctatattttgcaGTCCATAACGGTAAAAAGATACCCAGCTGAGCTATCATTGGCGACGTTAATATGCCTGGCGGGAACAGCGGAAACAACTGCAGTGGCACTTGTGGCTGAGCGTCACTCCCGCGCTTGGGCCGTTGGTTGGGATTATAGGCTCTATGCTCCTCTTTTCACGGGACTAGTTAGTTCAGGAATTGCGTACTATGTTCAAGGACTGGTGATGAAACTAAGAGGCCCCGTATTTGCAACAGCTTTCAATCCTCTTTGCATGATCGTTGTTGCTGGTTTGGCCTCCCTTATATTAGGGGAGCAACTCCATCTCGgaagTATCATTGGAGGCATTATCATCGCACTGGGCCTTTACTCGGTCGTGTGGGGCAAAGCAACGGACTATTCAGACCCCAAATTACTATCAGTAGATGCAGGAGACACAAAGTCACTGCCAATTTCTGCAACTGATGATTCCACAATTGATATTATTTCTGGGAATTTGGAAAAACAGCCATCAACCAAGCACAATTTAGAGGAGCCCAACAAAGTGGGGGAAGAAACAGAGCTGCATGTTGTGAAGGTTTAA 1167 0.4396 MSAVKVIGRLGLLFNNAKPYLLMIGLQFGMAGNYIFGKDVLNRGMSRFVFIVYRNAMATIALAPFAFFIERIITLLITWLILTRPVFNQSFTYLGMKYTSASFASTIVNAVPSITFLLAVIVRLERLEFKEVRSQAKVIGTLVTFGGALLMAIYKGPAFDLFHSGSTTHHENGSPSSHNHQTSGAIYILMGCVALSSFYILQSITVKRYPAELSLATLICLAGTAETTAVALVAERHSRAWAVGWDYRLYAPLFTGLVSSGIAYYVQGLVMKLRGPVFATAFNPLCMIVVAGLASLILGEQLHLGSIIGGIIIALGLYSVVWGKATDYSDPKLLSVDAGDTKSLPISATDDSTIDIISGNLEKQPSTKHNLEEPNKVGEETELHVVKV 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3015 388 PANTHER WAT1-RELATED PROTEIN 12 357 IPR030184 GO:0016021|GO:0022857
Ssu1g3015 388 SUPERFAMILY Multidrug resistance efflux transporter EmrE 245 324 - -
Ssu1g3015 388 SUPERFAMILY Multidrug resistance efflux transporter EmrE 53 155 - -
Ssu1g3015 388 Pfam EamA-like transporter family 18 151 IPR000620 GO:0016020|GO:0016021
Ssu1g3015 388 Pfam EamA-like transporter family 183 321 IPR000620 GO:0016020|GO:0016021
Ssu1g3015 388 PANTHER WAT1-RELATED PROTEIN 12 357 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3015 Ssu-Chr1 79116682 79121907 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3015 14 373 Nodulin-like Gene Family AT2G37460 44.595 2.97e-110 326
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3015 - - gmx:100786326 593.964
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3015 1 79116682 79121907 Ssu1g3015 1 79116682 79121907 ECH