Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3013 aTGGGTACGTGGTTCACAACTGCAAGGCCGTATCTGCTGTTATTGGCGGTTCAATTTGGCTCTGCTGGCATGTTCATTTTTGCCATGGATGCTATCAAGAAGGGCATGAGCCATTACGTGTTCATCGTCTACCGTAATGCCATCGCCTCTGTATCTCTCGCTCCCTTTGCATTTGTTCTAGAAAGgAAAGTTAGGCCCAAGATGACATTCCGGGTATTTTCGGAGATTATGGCACTGGCTTTCTTCGAAATAATACTCGATCAGTGCTTCGCCCTCTTGGGCATGAAATTCACGTCGGCATCTTTCCTATCTGCTGTGATGAACTCCGCACCCTCTATTACTTTTGTGTTGGCAGTCATTCTAAGAATGGAGCACATGAAGATTAAGGAGGTAGCATGTCAAGCCAAAGTGGTTGGCACAGTAATAACTTTTGGAGGCACGTTGCTAATGGCACTGTACAAAGGCCCCGTGCTTAGTCTTATGAGATCTTCAGCCAGCCATGCTAGCCAACCTGAGAATGTGACCAACCCCACTGGCAACCACTGGATCATAGGGACATGTTTCCTCCTCATTGGTTGTGCAGGCTTTTCTGCGTTTTACATATTACAGACCATAACATTGAGAAAATACCCAGCAGAGATGTCCCTGGCCACTTGGGTTTGCTTTGTAGGAGCACTTCAAAGCTCTGTTGTAGCAATCTTCGCAGAGCGCCACCACCCTCATGCCTGGTCCCTTGGTTGGGATACACGACTCTTTGCTCCTGCTTACGCGGGAATAGTTACATCTGGAGTTCAGTATTATATACAAGGCATGGTCATAAAATCTATGGGCCCAGTTATTGTGACTGCTTTTAACCCCCTGCGTATGATCATTGTTACGGGCTTGGCCTGCATCATCCTCTCTGAGAAACTCTTCCTTGGAAGTATTATTGGAGCAATTGTTGTGGTTCTTGGCCTTTATCTAGTTGTGTGGGGAAAGGCTAAAGAATGCAAATCTCGTATGGCACCGTCACCTACAGAGGATAACTCTCCACAAGACCAGCGACAGCTACCGGTCACGGCTCCCAGGAATGATAGCAATGATAATAAGGCTTAA 1095 0.4676 MGTWFTTARPYLLLLAVQFGSAGMFIFAMDAIKKGMSHYVFIVYRNAIASVSLAPFAFVLERKVRPKMTFRVFSEIMALAFFEIILDQCFALLGMKFTSASFLSAVMNSAPSITFVLAVILRMEHMKIKEVACQAKVVGTVITFGGTLLMALYKGPVLSLMRSSASHASQPENVTNPTGNHWIIGTCFLLIGCAGFSAFYILQTITLRKYPAEMSLATWVCFVGALQSSVVAIFAERHHPHAWSLGWDTRLFAPAYAGIVTSGVQYYIQGMVIKSMGPVIVTAFNPLRMIIVTGLACIILSEKLFLGSIIGAIVVVLGLYLVVWGKAKECKSRMAPSPTEDNSPQDQRQLPVTAPRNDSNDNKA 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3013 364 Pfam EamA-like transporter family 10 150 IPR000620 GO:0016020|GO:0016021
Ssu1g3013 364 Pfam EamA-like transporter family 184 323 IPR000620 GO:0016020|GO:0016021
Ssu1g3013 364 PANTHER WAT1-RELATED PROTEIN 7 354 - -
Ssu1g3013 364 MobiDBLite consensus disorder prediction 333 364 - -
Ssu1g3013 364 PANTHER WAT1-RELATED PROTEIN 7 354 IPR030184 GO:0016021|GO:0022857
Ssu1g3013 364 SUPERFAMILY Multidrug resistance efflux transporter EmrE 220 327 - -
Ssu1g3013 364 MobiDBLite consensus disorder prediction 336 364 - -
Ssu1g3013 364 SUPERFAMILY Multidrug resistance efflux transporter EmrE 44 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3013 Ssu-Chr1 78979590 78982986 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3013 8 363 Nodulin-like Gene Family AT2G37460 43.258 1.81e-106 315
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3013 - - gmx:100811984 645.966
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3013 1 78979590 78982986 Ssu1g3013 1 78979590 78982986 ECH