Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3012 atGGGTACGTGGTTCACAACTGCAAAGCCGTATCTGCTGTTATTGGCGGTCCAATTTGGCTCTGCCGGCATGTTCATTTTTGCCATGGATGCTATCAAGAAGGGCATGAGCCATTACGTGTTCATCGTCTACCGTAATGCCATCGCCTCTATAACTCTCGCTCCCTTCGCATTTGTTCTAGAAAGGAAAGTTAGGCCCAAGATAACTGTCCGGATATTTTCAGAGATTATGGCGCTGGCTTTCTTCGAAATAATACTCGATCAGTGCTTCGCCCTCTTGGGCATGAAATTCACGTCGGCATCTTTCCTATCTGCTGTAATGAACTCCGCACCCTCTGTTACCTTTTTGTTGGCAGTCATTCTCAGATTGGAGCACATGAAGATCAAGGAGGTAACATGTCAAGCCAAAGTGATGGGGACAATAGTGACTTTTGGAGGCACGTTGCTAATGGCACTATACAAAGGCCCGGTACTTAGCTTTATGAGATCTTCAACCAGCCATGCTGGCCCACCTGAGAACGTGAACAACCCCACTGGTAACCACTGGATCATAGGGACATGTTTCCTCCTCATTGGTTGTGCAGGCTTTTCTGCGTTTTACATATTACAAACCATAACATTGAGAAAATACCCAACAGAGATGTCCCTGGCCACTTGGGTTTGCTTTGTAGGTGCACTTCAAAGCTCTGTTGTAGCAATCTTCGCAGAACGCCATCACCCTCATGCCTGGTCCCTTGGTTGGGATACACGACTCTTTGCTCCTGCTTACGCGGGAATAGTTACATCTGGAGTTCAGTATTACGTACAAGGCATGGTCATAAAATCCATGGGCCCAGTTATTGTGACTGCTTTTAATCCCCTGCGCATGATCATTATTACGACCTTGGCCTGTATCATCCTATCTGAGAAACTCTACCTTGGAAGCATTATTGGAGCAATAATTGTGGTTCTTGGGCTTTATCTAGTTGTGTGGGGAAAATCTAAAGAATGCAAATGTCGAATGCCTCCGTCCCCTGCAGAGGATAACTCTCCAGAAGACCAACGACAGCTACCGGTCACAGCTCCCAGGAATGATAGCAATgataataaggtttaa 1095 0.4584 MGTWFTTAKPYLLLLAVQFGSAGMFIFAMDAIKKGMSHYVFIVYRNAIASITLAPFAFVLERKVRPKITVRIFSEIMALAFFEIILDQCFALLGMKFTSASFLSAVMNSAPSVTFLLAVILRLEHMKIKEVTCQAKVMGTIVTFGGTLLMALYKGPVLSFMRSSTSHAGPPENVNNPTGNHWIIGTCFLLIGCAGFSAFYILQTITLRKYPTEMSLATWVCFVGALQSSVVAIFAERHHPHAWSLGWDTRLFAPAYAGIVTSGVQYYVQGMVIKSMGPVIVTAFNPLRMIIITTLACIILSEKLYLGSIIGAIIVVLGLYLVVWGKSKECKCRMPPSPAEDNSPEDQRQLPVTAPRNDSNDNKV 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3012 364 SUPERFAMILY Multidrug resistance efflux transporter EmrE 44 154 - -
Ssu1g3012 364 PANTHER WAT1-RELATED PROTEIN 7 354 - -
Ssu1g3012 364 PANTHER WAT1-RELATED PROTEIN 7 354 IPR030184 GO:0016021|GO:0022857
Ssu1g3012 364 Pfam EamA-like transporter family 9 150 IPR000620 GO:0016020|GO:0016021
Ssu1g3012 364 Pfam EamA-like transporter family 184 323 IPR000620 GO:0016020|GO:0016021
Ssu1g3012 364 MobiDBLite consensus disorder prediction 342 364 - -
Ssu1g3012 364 SUPERFAMILY Multidrug resistance efflux transporter EmrE 220 327 - -
Ssu1g3012 364 MobiDBLite consensus disorder prediction 332 364 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3012 Ssu-Chr1 78914783 78964550 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3012 9 364 Nodulin-like Gene Family AT1G44800 42.179 2.07e-105 312
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3012 - - gmx:102665912 664.455