Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3011 ATGGAGGACCAAAATGCTAGTGGTAGCTTGAGCCAGGGACTTCGCAAGGTGAAGCCTTACCTTGCTATATTGTCCCTTCAGGTTGGCTACTCTGGGATGTATATCATCATTATGGTTTCTTTCAAGCATGGCATGAGTCACTGGATACTCTCGGTGTACCGACATGTAGTTGCCGCTATTATAATAGGCCCTTTTGCGCTTGTCCTTGAAAGAAAAATAAGACCAAAGATGACTCTTCCCATCTTCCTGAGGATAGTGGCACTTGGTTTCCTTGAGCCCGTGCTAGATCAGAACTTGTACAACGTGGGGATGAAGATGACCTCAACAACGTTTGCATCCGCCACTGTTAATGTCCTCCCAGCCATTACTTTTATAATGGCACTCATTTTCAGGCTAGAGAAGGTCAACTTGAGAAAATTTCACAGCCTGGCCAAGGTCATAGGAACCGTTATAACAGTTTCAGGAGCTATGGTTATGACTCTGTACAAAGGCCCTGCCTTCCAAATCATAAAGGGGGGAGGAGCCATCAGCCACCATAGCAACTCTAGCAGTAGTACCACCGAACCCTCTGACCAGCACTGGATAGTTGGCACTGTACTGCTCATATCGAGTTGTGCTAGTTGGGCTGGTTTCTTCATTTTGCAATCACTCACTTTGAAGAAGTACCCGGCAGAGCTCTCACTCACAGCTTGGATTTGCGTGTTGGGTATTATTGAGGGTTCAATCGCATCCCTTATATTTGAACGAGACTTCAGCGTGTGGACCATAGGATGGGACTCTAGGCTTCTTGCTTGTGTTTATTCTGGGGTGATATGTTCTGGAATGGCGTATTATGTACAAGGGGTTGTAACCAGGGAACGTGGACCAGTGTTTGTAACTTCTTTCAGCCCTCTATGTATGATTATCACCGCTGCATTGAGTTCCCTTGTCTTGGCCGAGCAAGTTCATCTAGGAAgTATATTTGGGGCTATTATCATTGTGTGCGGTCTTTACACTGTGGTGTGGGGCAAAAGCAAAGACCGTCAGAACACAACAGACATAGGGAAAGGCGAAAGCCAAGAATTGCCAATAAAGGACGGTACAAAATCAGCGTCAGACACATTTGACGGCATTGAGATCAATGTTCCTGCTGAATTGTTGAAGAAAGGGGCAGGGAAAAATGTCCCACCAGCAACAACATCAGGTCCTTTTATAGGACTAGCACTATAA 1209 0.4574 MEDQNASGSLSQGLRKVKPYLAILSLQVGYSGMYIIIMVSFKHGMSHWILSVYRHVVAAIIIGPFALVLERKIRPKMTLPIFLRIVALGFLEPVLDQNLYNVGMKMTSTTFASATVNVLPAITFIMALIFRLEKVNLRKFHSLAKVIGTVITVSGAMVMTLYKGPAFQIIKGGGAISHHSNSSSSTTEPSDQHWIVGTVLLISSCASWAGFFILQSLTLKKYPAELSLTAWICVLGIIEGSIASLIFERDFSVWTIGWDSRLLACVYSGVICSGMAYYVQGVVTRERGPVFVTSFSPLCMIITAALSSLVLAEQVHLGSIFGAIIIVCGLYTVVWGKSKDRQNTTDIGKGESQELPIKDGTKSASDTFDGIEINVPAELLKKGAGKNVPPATTSGPFIGLAL 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3011 402 MobiDBLite consensus disorder prediction 343 363 - -
Ssu1g3011 402 SUPERFAMILY Multidrug resistance efflux transporter EmrE 254 339 - -
Ssu1g3011 402 PANTHER WAT1-RELATED PROTEIN 13 366 - -
Ssu1g3011 402 Pfam EamA-like transporter family 31 152 IPR000620 GO:0016020|GO:0016021
Ssu1g3011 402 Pfam EamA-like transporter family 197 334 IPR000620 GO:0016020|GO:0016021
Ssu1g3011 402 PANTHER WAT1-RELATED PROTEIN 13 366 IPR030184 GO:0016021|GO:0022857
Ssu1g3011 402 SUPERFAMILY Multidrug resistance efflux transporter EmrE 53 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3011 Ssu-Chr1 78851544 78855402 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3011 14 359 Nodulin-like Gene Family AT4G08300 66.763 8.88e-169 475
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3011 - - gmx:100783910 707.212