Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2993 ATGGAAGGTGAGGAGGGGAAACAGTCTTCCCACAAAAACCCTTACGTTGAACTCGAGGAAGTTGACTTTGATTTTATTCTAGCAATGAGCATGCAAGAACAAGCTGGGAGAGAGTTCACAATGCTTACAACTATTGAAAGTGAAGGTGATGAATATCTAAGTGACTCCTCttttgataatgatgatgatggtgatccTGACTTTTTAGAGAGCCAGGAGTTTGGAACCGACCTTCAGTTTCTTGAAGGTGAAGGAAGCAACGATGATGATGAAATGGAAGTGGAAGAAGATGAGATTGATCCAGATGAATTATCTTATGAAGAGTTGATGGAGTTGGGAGAGTTTATAGGAGAAGAGACAAGAGGATTATCAGCAAATGAAATCTCCTTGTGCTTGTACCCTTATAAATGCCAATGTGCTGAAAGCAAAAGTGGCATCGATCGTTGTGTGATTTGTCAGGTTGAATATGAAGAAGGTGAAGCGCTGGTGGCACTTCGGTGTGAGCACCCTTATCATGCAGATTGCATAAGCAAATGGCTTCATATTAAGAAGGTTTGTCCAATTTGTAGCAATGAAGTTTCAACTCCCAACATGGCTTGGAACCCTTAG 609 0.3974 MEGEEGKQSSHKNPYVELEEVDFDFILAMSMQEQAGREFTMLTTIESEGDEYLSDSSFDNDDDGDPDFLESQEFGTDLQFLEGEGSNDDDEMEVEEDEIDPDELSYEELMELGEFIGEETRGLSANEISLCLYPYKCQCAESKSGIDRCVICQVEYEEGEALVALRCEHPYHADCISKWLHIKKVCPICSNEVSTPNMAWNP 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2993 202 ProSiteProfiles Zinc finger RING-type profile. 149 190 IPR001841 -
Ssu1g2993 202 PANTHER E3 UBIQUITIN LIGASE BIG BROTHER-RELATED-LIKE 1 198 - -
Ssu1g2993 202 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 147 198 IPR013083 -
Ssu1g2993 202 MobiDBLite consensus disorder prediction 46 74 - -
Ssu1g2993 202 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 1 198 IPR045191 GO:0061630
Ssu1g2993 202 SUPERFAMILY RING/U-box 148 196 - -
Ssu1g2993 202 Pfam Ring finger domain 148 189 IPR001841 -
Ssu1g2993 202 SMART ring_2 149 189 IPR001841 -
Ssu1g2993 202 MobiDBLite consensus disorder prediction 52 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2993 Ssu-Chr1 78619412 78620020 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2993 87 193 C3H Transcription Factor Family AT3G63530 50.909 8.12e-29 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2993 K19045 - gmx:100526881 350.517