Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2992 ATGGCATCAGAGCTTCAATTGCCCCCAGGCTTCAGATTCCATCCAACCGACGAGGAGCTCGTGATGCACTATCTCTGCCGCAAATGCACGTCGCAGCCCATCGCCGTTCCCATCATCGCCGAAATCGACCTCTACAAATACGATCCTTGGGACCTACCAGGACTGGCTACGTACGGAGAGAAGGAGTGGTACTTCTTCTCACCACGGGAGCGGAAATACCCGAACGGTTCGAGGCCGAACCGGGCGGCGGGAACCGGGTACTGGAAGGCAACCGGGGCGGATAAGCCCATTGGTCACCCGAAACCGGTTGGGATCAAGAAAGCGTTGGTGTTTTACGCAGGGAAAGCCCCGAAAGGGGACAAAACCAATTGGATCATGCACGAGTATCGTCTCGCCGATGTGGATCGCTCCGTTCGCAAAAAGAACAGCCTAAGGTTGGATGATTGGGTGCTTTGCCGTATCTACAACAAGAAGGGCACGATCGAGAAACAATCAAGCAGCGATGCGGTTAGTGTTAGGCCGAAACTCGAATCCTCGGAGATCGAAGACAAGAAGCCGGAGATTCTGACAGGCGGAGTTTGTCttccgccgccgccgccgcctcCGCCGCAAGCCTCGGCGGCGATGACGGATTACATATACTTTGACCCGTCGGATTCGGTTCCGAAGCTGCACACGGACTCGAGCTGTTCGGAGCACGTGGTTTCGCCGGAATTCGCGAGCGAGGTGCAGAGCGAGCCCAAGTGGCACGAGTGGGAGAAGAACCTCGAGTTTACGTATAATTACGTGGATGCCACTCTCAACAACAACGGCTTCGGGACCCAGTTCCAGAGCAGTAATCAGATGTCGCCGCTGCAGGACATGTTCATGTACTGGCCCAAGCCCTTCTGA 891 0.541 MASELQLPPGFRFHPTDEELVMHYLCRKCTSQPIAVPIIAEIDLYKYDPWDLPGLATYGEKEWYFFSPRERKYPNGSRPNRAAGTGYWKATGADKPIGHPKPVGIKKALVFYAGKAPKGDKTNWIMHEYRLADVDRSVRKKNSLRLDDWVLCRIYNKKGTIEKQSSSDAVSVRPKLESSEIEDKKPEILTGGVCLPPPPPPPPQASAAMTDYIYFDPSDSVPKLHTDSSCSEHVVSPEFASEVQSEPKWHEWEKNLEFTYNYVDATLNNNGFGTQFQSSNQMSPLQDMFMYWPKPF 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2992 296 ProSiteProfiles NAC domain profile. 7 157 IPR003441 GO:0003677|GO:0006355
Ssu1g2992 296 MobiDBLite consensus disorder prediction 163 202 - -
Ssu1g2992 296 Pfam No apical meristem (NAM) protein 8 131 IPR003441 GO:0003677|GO:0006355
Ssu1g2992 296 Gene3D NAC domain 16 161 IPR036093 GO:0003677|GO:0006355
Ssu1g2992 296 SUPERFAMILY NAC domain 4 157 IPR036093 GO:0003677|GO:0006355
Ssu1g2992 296 PANTHER NAC DOMAIN-CONTAINING PROTEIN 2-LIKE 2 275 - -
Ssu1g2992 296 PANTHER NAC TRANSCRIPTION FACTOR 56 2 275 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2992 Ssu-Chr1 78599028 78600599 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2992 1 296 NAC Transcription Factor Family AT1G01720 70.820 1.78e-149 419
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Ssu1g2992 NAM 9.6e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2992 - - gmx:100805768 533.487