Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2991 ATGGCGGAGACGACCCATCCCATGGACATCGACAGCGACGACCAAACTTACATCGCGAGGCCTGACAAGGGCAAAAGTGTCATCGTCGCCGGCAACCCTCCCGGCGCCGGCAGGGCCATTCCGTGGGTGGAAAAGTACCGCCCTCAGTCCCTCGACGACGTCGCCGCTCACCGTGACATTGTCGATACTATTGATAGGCTGACCACCGAGAACAGATTGCCTCATCTTCTATTGTATGGCCCTCCTGGCACTGGCAAAACATCAACGATTCTCGCTGTGGCACGGAAACTGTATGGTTCTCAGTACCACAATATGATTTTGGAGCTCAATGCATCAGATGATAGAGGAATTGATGTTGTGCGACAGCAGATTCAAGATTTTGCTAGCACTCAGAGCTTATCATTTGGTGTCAAGTCCTCTGTAAAACTGGTATTGTTAGATGAAGCGGATGCCATGACAAAGGATGCCCAATTTGCATTACGCAGAGTGATTGAGAAATATACAAAAAGCACTAGGTTTGCACTTATCTGTAATCATGTAAACAAGATTATTCCTGCACTTCAATCAAGATGCACTCGGTTTCGGTTTGCCCCTCTTGACGCTGTCCACGTCACCGAAAGACTGAAACATGTTATTAAGGCTGAAGGGCTTGATGTTCAAGACAGTGGCTTAGCAGCTCTTGTTCGGCTTAGCAATGGCGATATGAGAAAGGCTTTGAATATTCTTCAGTCAACACATATGGCTTCTCAGCAGATAACAGAAGAAGCTGTTTACCTGTGCACTGGAAATCCATTGCCCAAAGACATTGAGCAAATATCTTACTGGCTTCTAAATGAACAATTTGCAGACAGCTTTAAAAGAATATATGAAATGAAGACAAGGAAAGGGTTGGCCCTGGTTGATATTGTCAGAGAAGTGACAATGTTTGTTTTTAAGATAAAGATGGCTTCAGCTGTTCGAGTACAGTTGATGAATGATTTAGCAGACATAGAGTACAGATTAAGTTTTGGGTGCAATGATAAGCTTCAGCTTGGATCGGTTATTGCTTCTTTTACACGTGCTAGATCTGCACTGGTTGCAGCTGCTACATAG 1092 0.4505 MAETTHPMDIDSDDQTYIARPDKGKSVIVAGNPPGAGRAIPWVEKYRPQSLDDVAAHRDIVDTIDRLTTENRLPHLLLYGPPGTGKTSTILAVARKLYGSQYHNMILELNASDDRGIDVVRQQIQDFASTQSLSFGVKSSVKLVLLDEADAMTKDAQFALRRVIEKYTKSTRFALICNHVNKIIPALQSRCTRFRFAPLDAVHVTERLKHVIKAEGLDVQDSGLAALVRLSNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNEQFADSFKRIYEMKTRKGLALVDIVREVTMFVFKIKMASAVRVQLMNDLADIEYRLSFGCNDKLQLGSVIASFTRARSALVAAAT 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2991 363 Gene3D - 264 361 - -
Ssu1g2991 363 SUPERFAMILY post-AAA+ oligomerization domain-like 264 354 IPR008921 GO:0003677|GO:0006260
Ssu1g2991 363 CDD AAA 60 198 - -
Ssu1g2991 363 CDD HLD_clamp_RFC 199 261 - -
Ssu1g2991 363 Gene3D - 36 198 IPR027417 -
Ssu1g2991 363 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 40 257 IPR027417 -
Ssu1g2991 363 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 35 359 - -
Ssu1g2991 363 SMART AAA_5 72 202 IPR003593 -
Ssu1g2991 363 Gene3D - 202 263 - -
Ssu1g2991 363 PANTHER REPLICATION FACTOR C SUBUNIT 5 35 359 - -
Ssu1g2991 363 Pfam ATPase family associated with various cellular activities (AAA) 76 196 IPR003959 GO:0005524|GO:0016887
Ssu1g2991 363 Pfam Replication factor C C-terminal domain 264 350 IPR013748 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2991 Ssu-Chr1 78575122 78588733 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2991 1 362 Core DNA Replication Machinery Family AT1G77470 78.649 0.0 587
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2991 K10756 - gmx:100782652 674.085