Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2988 ATGTCGGGTGAGGAGTCACAGTCACAGAAGAAGGTGTTTGACGCAGAAGCAGCGTCGTCGCTGGTGAAGGAGCTGAGGGAGAACTTCGGTTCTGGAAAGACGCGAAGTTATGCATGGAGAGTGTCGCAGGTGAAAGCCCTATTGAAGGCGATGGTTGATAACGAGGAGCAGATCGTCGATGCTCTTCGTTCCGACCTAGCCAGGCCTCCACTCGAAACCGTCGTCTACGAGGTTGGCATGTTTAAAAACTCATGTGAAGTCATACTGAAGGAATTGAAACATTGGATGACGCCAGAAAAGGTCAAAACTTCAATCACAACTTTTCCATCTTCAGCTGAAATAGTACCTGAACCGCTGGGTGTTGTGTTAGTCATCTCTGCATGGAACTATCCAATTTTGTTGTCTCTTGATCCAGTCGTTGGAGCTATAGCAGCTGGTAATGCTGTGGTTCTAAAACCATCAGAAATTGCTCCAGCCTCATCATCACTACTAGCAAAATTGATAGGGAAGTATATGGATAACTCACTTATAAGAGTTGTCGAGGGGGCAGTTGATGAAACAACCGCACTATTGCAGCAAAAGTGGGACAAGATTTTCTACACAGGTAATGGAAGAGTGGGAAGAATTGTGATGACTGCTGCTGCAAAACACCTTACACCAGTTGTCCTGGAGCTTGGAGGAAAATCTCCGGTTGTTGTTGATTCAAATGTCAATTTGCCGGTAACAGCTAGACGAATAATTTCTGGCAAGTGGGGATTGAACAATGGACAAGCCTGCATTTCTCCAGATTATGTTATAACAACAAAAGACTATGCTCCCAAATTGGTGGATGCCCTAAAGACTGAATTGGAGAAGTGTTATGGAAAGAAGCCGTTGGAATCAGAAGATTTGTCTCGAATTGTGAGTTCCAACCACTTTGCTCGCTTGTCAAAGCTCTTGGATGATGATAAGGTTTCTGGCAAGATTGTTTATGGAGGTGAAAAGGATGAAAAGAAATTAAGGATTGCTCCTACTGTTTTATTGGATGTTCCGCGAGATTCTCTGATAATGGGTGAGGAGATATTTGGTCCATTGCTTCCCATCATCACGGTCAATAAACTGGAAGAAAGTATAGATGTGATCAACTCAGGAACGAAGCCCCTCGCTGCATATTTATTTACAACCGATAAGAAGTTCAAGGAGCATTTCGTACTGAATGTTGCTGCCGGGGGTTTGCTTGTTAATGACACTGTCttacatCTTGTGGTTCATACTTTGCCATTTGGGGGAGTAGGGGATAGTGGAATGGGGGCATACCATGGGAAGTTCTCGTTTGACGCTTTTACACACAAAAAGGCAGTTCTTTATCGCAGTTTTGCTGGTGATGCGTCAATAAGGTACCCACCATACACGGATACAAAGCTGAGATTGATGAAGGCTCTCATCGGTGGTGGTATCCTTGGCATAATTCGTGCTCTTCTCGGATGGTCCTAA 1473 0.4433 MSGEESQSQKKVFDAEAASSLVKELRENFGSGKTRSYAWRVSQVKALLKAMVDNEEQIVDALRSDLARPPLETVVYEVGMFKNSCEVILKELKHWMTPEKVKTSITTFPSSAEIVPEPLGVVLVISAWNYPILLSLDPVVGAIAAGNAVVLKPSEIAPASSSLLAKLIGKYMDNSLIRVVEGAVDETTALLQQKWDKIFYTGNGRVGRIVMTAAAKHLTPVVLELGGKSPVVVDSNVNLPVTARRIISGKWGLNNGQACISPDYVITTKDYAPKLVDALKTELEKCYGKKPLESEDLSRIVSSNHFARLSKLLDDDKVSGKIVYGGEKDEKKLRIAPTVLLDVPRDSLIMGEEIFGPLLPIITVNKLEESIDVINSGTKPLAAYLFTTDKKFKEHFVLNVAAGGLLVNDTVLHLVVHTLPFGGVGDSGMGAYHGKFSFDAFTHKKAVLYRSFAGDASIRYPPYTDTKLRLMKALIGGGILGIIRALLGWS 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2988 490 PIRSF ALDH 4 480 IPR012394 GO:0006081
Ssu1g2988 490 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 223 230 IPR029510 GO:0016491
Ssu1g2988 490 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 227 427 IPR016163 GO:0016620
Ssu1g2988 490 SUPERFAMILY ALDH-like 21 457 IPR016161 GO:0016491
Ssu1g2988 490 PANTHER ALDEHYDE DEHYDROGENASE 4 490 - -
Ssu1g2988 490 Pfam Aldehyde dehydrogenase family 13 447 IPR015590 GO:0016491
Ssu1g2988 490 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 26 445 IPR016162 GO:0016491
Ssu1g2988 490 PANTHER ALDEHYDE DEHYDROGENASE 4 490 IPR012394 GO:0006081
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2988 Ssu-Chr1 78528983 78536377 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2988 78 488 Aldehyde Dehydrogenase Gene Family AT1G44170 72.263 0.0 634
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2988 K00128 - gmx:100783726 871.692