Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2987 ATGGCAGAGCGTGTGTTACTCACTCCTTCACTGCCTTTACCATCTCCACACTCTCCTCCAACCAGAATGGCTCTTCTGGGCGCCGCCGCCTCCACTCGCATGATTCCCTCCGTCTCACTCTCCTTCTCTTCCCGTTCCTTCTTCTCATTCTcgtcctcttcttcttcctcgtTCAAATGCTTGCGGTCCTCTCCTCGCATTTCTCACCTGTTTCTAAATCAGCGAAGAGCGGAGGTTCGCGTTTCAAGTGGAGGATACGGAACAGTGTTGGCGCCGAAGTCCTTTGCGTCTGATCCTGATCAGTTGAAGAGCGCTAGAGAAGATATCAAGGAGCTTCTCAGGTCCAAGTTCTGCCATCCTATTCTGATTCGTTTGGGATGGCATGATGCTGGTACTTATAATAAGAATATTGAGGAGTGGCCACAGAGAGGTGGAGCTAATGGTAGCTTAAGATTTGAAATTGAGCTGAAACATGCAGCCAATGCTGGACTTGTAAATGCATTGAAACTTCTTCAGCCAATCAAAGACAAATACTCTGGTGTGACATATGCAGACTTATTTCAGTTGGCTGGTGCTACAGCTGTGGAGGAAGCTGGAGGCCCAAAAATCCCTATGAAATATGGAAGAGTGAATGTATCTGAACCTGAACAATGCCCTGAAGAAGGGAGACTTCCTGaTGCCGGCCCCCCTTCACCTGCTGATCATTTGCGTCAAGTTTTCTATCGAATGGGTTTGAATGACAAGGAAATTGTTGCATTATCTGGTGCGCACACACTGGGGCGGTCTAGACCAGATCGCAGTGGTTGGGGAAAGCCTGAGACTAAATATAcgAAAGATGGGCCAGGAGCGCCTGGAGGACACTCCTGGACAGTGCAATGGTTGAAATTTGACAACTCTTACTTCAAGGAcatcaaagaaaaaaaggatgaagatCTACTGGTATTGCCAACTGATGCTGCTCTATTTGAAGACCCATCCTTCAAGGTATATGCTGAGAAATATGCCGAAGATCAGGAAGCATTCTTTAAAGATTATGCTGAAGCCCATGCAAAACTTAGCAACCTTGGAGCCAAATTTGATCCTCCAGAGGGCATTGTGATAGATGATTCTCCAAATGCAGTGGCAGAGAAGTTTGTAGCAGCCAAGTACTCCTCTGGAAAGAGAGAGCTGTCTGAGGCTATGAAGCAGAAGATGCGGGCTGAATATGAGGCAATTGGTGGAAGCCCAGATAAGCCTCTACAGtcaaactattttctaaatatcaTGATTATTGTTGCCGTTTTGGCATTTTTGACATCACTGCTTGGAAACTAG 1314 0.4452 MAERVLLTPSLPLPSPHSPPTRMALLGAAASTRMIPSVSLSFSSRSFFSFSSSSSSSFKCLRSSPRISHLFLNQRRAEVRVSSGGYGTVLAPKSFASDPDQLKSAREDIKELLRSKFCHPILIRLGWHDAGTYNKNIEEWPQRGGANGSLRFEIELKHAANAGLVNALKLLQPIKDKYSGVTYADLFQLAGATAVEEAGGPKIPMKYGRVNVSEPEQCPEEGRLPDAGPPSPADHLRQVFYRMGLNDKEIVALSGAHTLGRSRPDRSGWGKPETKYTKDGPGAPGGHSWTVQWLKFDNSYFKDIKEKKDEDLLVLPTDAALFEDPSFKVYAEKYAEDQEAFFKDYAEAHAKLSNLGAKFDPPEGIVIDDSPNAVAEKFVAAKYSSGKRELSEAMKQKMRAEYEAIGGSPDKPLQSNYFLNIMIIVAVLAFLTSLLGN 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2987 437 PANTHER L-ASCORBATE PEROXIDASE 8, CHLOROPLASTIC-RELATED 389 437 - -
Ssu1g2987 437 CDD ascorbate_peroxidase 94 360 - -
Ssu1g2987 437 Gene3D - 105 358 - -
Ssu1g2987 437 PRINTS Plant ascorbate peroxidase signature 180 198 IPR002207 GO:0004601|GO:0006979|GO:0020037
Ssu1g2987 437 PRINTS Plant ascorbate peroxidase signature 119 134 IPR002207 GO:0004601|GO:0006979|GO:0020037
Ssu1g2987 437 PRINTS Plant ascorbate peroxidase signature 318 342 IPR002207 GO:0004601|GO:0006979|GO:0020037
Ssu1g2987 437 PRINTS Plant ascorbate peroxidase signature 98 118 IPR002207 GO:0004601|GO:0006979|GO:0020037
Ssu1g2987 437 PRINTS Plant ascorbate peroxidase signature 199 211 IPR002207 GO:0004601|GO:0006979|GO:0020037
Ssu1g2987 437 ProSiteProfiles Plant heme peroxidase family profile. 181 366 IPR002016 GO:0004601|GO:0006979|GO:0020037
Ssu1g2987 437 SUPERFAMILY Heme-dependent peroxidases 98 358 IPR010255 GO:0004601|GO:0006979|GO:0020037
Ssu1g2987 437 ProSitePatterns Peroxidases proximal heme-ligand signature. 249 259 IPR019793 -
Ssu1g2987 437 PANTHER L-ASCORBATE PEROXIDASE 8, CHLOROPLASTIC-RELATED 23 372 - -
Ssu1g2987 437 Gene3D Peroxidase, domain 2 227 350 - -
Ssu1g2987 437 PANTHER THYLAKOID LUMENAL 29 KDA PROTEIN, CHLOROPLASTIC-RELATED 389 437 IPR044831 GO:0004601|GO:0034599
Ssu1g2987 437 Pfam Peroxidase 106 337 IPR002016 GO:0004601|GO:0006979|GO:0020037
Ssu1g2987 437 PRINTS Haem peroxidase superfamily signature 199 211 IPR002016 GO:0004601|GO:0006979|GO:0020037
Ssu1g2987 437 PRINTS Haem peroxidase superfamily signature 289 304 IPR002016 GO:0004601|GO:0006979|GO:0020037
Ssu1g2987 437 PRINTS Haem peroxidase superfamily signature 249 264 IPR002016 GO:0004601|GO:0006979|GO:0020037
Ssu1g2987 437 PRINTS Haem peroxidase superfamily signature 181 198 IPR002016 GO:0004601|GO:0006979|GO:0020037
Ssu1g2987 437 PRINTS Haem peroxidase superfamily signature 119 133 IPR002016 GO:0004601|GO:0006979|GO:0020037
Ssu1g2987 437 PANTHER THYLAKOID LUMENAL 29 KDA PROTEIN, CHLOROPLASTIC-RELATED 23 372 IPR044831 GO:0004601|GO:0034599
Ssu1g2987 437 MobiDBLite consensus disorder prediction 256 284 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2987 Ssu-Chr1 78487144 78494290 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2987 69 355 Peroxidase AT2G22420 26.498 1.35e-17 81.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2987 K00434 - zju:107421087 681.789