Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2983 ATGGAGTGTGTGGATACCAGAAAATTACagttacaacaacaacaacagcaactgCAACAGCCGCAAccgcagcagcagcagcaacatTTTCATGTGCTGGCAGTGGACGACAGTGTCATAGATAGGAAGCTTTTGGAGAGGCTCCTAAGAGGTTCTTCATGCAAAGTTACCTGCGTGGACTCTGGAGACAAGGCTTTGAAATATCTTGGTCTGATTGATGACATTGACGACACTTCCTCAAGCTCTTTAGAATCATCATCTTCTCCTTCACCTCAACCATTACAGCAAGAGGGAATCAAAGTGAATTTGATCATGACAGATTATTGCATGCCTGGGATGAGTGGCTATGATTTACTCAAACGAGTCAAGGGATCTTCTTGGAAAGATGTTCCAGTCGTGATTATGTCATCAGAAAATGTACCTTCCAGAATCAGCATGTGCTTAGAAGGAGGGGCAGAAGAGTTTCTACTGAAGCCTCTTCAGTTATCGGATTTGGATAAGCTTCAGCCGTACTTTCTGAAATCCCTTGATAATTCTTGTGAAAAAGAATCTGCCAACAATTCCATAGATTCCGACAATAATGAAAATgtcatcaacaacaataacagtAACAATAGCAATAATAGTATTAGCAAAAGGAAGGCCATGTCTCCTGAGCCTCATCAGGAGAGATCAAGACCCAAAATGAAAGGGTTGGCGGTGGTGTAA 708 0.3799 MECVDTRKLQLQQQQQQLQQPQPQQQQQHFHVLAVDDSVIDRKLLERLLRGSSCKVTCVDSGDKALKYLGLIDDIDDTSSSSLESSSSPSPQPLQQEGIKVNLIMTDYCMPGMSGYDLLKRVKGSSWKDVPVVIMSSENVPSRISMCLEGGAEEFLLKPLQLSDLDKLQPYFLKSLDNSCEKESANNSIDSDNNENVINNNNSNNSNNSISKRKAMSPEPHQERSRPKMKGLAVV 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2983 235 CDD REC_typeA_ARR 32 168 - -
Ssu1g2983 235 PANTHER TWO-COMPONENT RESPONSE REGULATOR ORR4 13 234 - -
Ssu1g2983 235 SUPERFAMILY CheY-like 30 168 IPR011006 -
Ssu1g2983 235 ProSiteProfiles Response regulatory domain profile. 31 173 IPR001789 GO:0000160
Ssu1g2983 235 PANTHER TWO-COMPONENT RESPONSE REGULATOR 13 234 IPR045279 GO:0009736
Ssu1g2983 235 MobiDBLite consensus disorder prediction 182 235 - -
Ssu1g2983 235 Pfam Response regulator receiver domain 100 166 IPR001789 GO:0000160
Ssu1g2983 235 SMART REC_2 30 169 IPR001789 GO:0000160
Ssu1g2983 235 MobiDBLite consensus disorder prediction 182 215 - -
Ssu1g2983 235 Gene3D - 31 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2983 Ssu-Chr1 78367903 78370653 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2983 27 233 Response Regulator Gene Family AT3G57040 45.690 3.51e-61 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Ssu1g2983 Response_reg 3.5e-13 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2983 K14492 - gmx:100801334 314.309