Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2979 ATGGGGGAAAGGGTGGAGACGCTTGCCAGATTAGCCCAGTGGAAGATCGACAACTTCGGACCTTGTTCCTACAAAAAATCGGAACCCTTCAAGGTCGGAATCTGGAACTGGTATTTTTCAATAGTGAGGAATAGGTACCTCTACATACATCTTTTTCCAGAACCTTCGCCGGTTTCTAAGGATCACCCACCCTATGCTCGATTCATTCTTCGCGTCTCCAATGCCGGTTCATCCCGCAGCTTTCATATTTCCCCTGTTCAAGAAAAGCTGCTTAGGACACATGATGACTTTGTCTGGCCTGTGGATACTGCTTTTGTTGGTCGCTTCATCATTGATGTTGAGTTTCTAGACCTCAAGATATGCCCTCCGAATGGTGGAGAAACTAGTTCTGTATGGCGATCTGATGGAAATTCACAATCCGTAGCATCCCAAAATAGCACTCTTCATAGCCTCTCTCGCATGCTTGATGAGGCTATACATGCTGACCTAACCATTATCACTGCTGATGGCACATTGAGAGCTCACAAGGCGATTTTGTCAGCTAGTTCTCCAGTGTTCCAGAGCATGTTTCATCACAACCTGAAGGAAAAAGAGTCCTCTACAATCCATATAGAAGACATGTCACTTGAATCCTGCACGGCTCTTCTAAGTTACATATATGGAACAATCAAACAAGAAGATTTCTGGAAACATAGGCTTGCATTGCTTGGAGCTGCCAATAAGTATGACATTGGCGGTCTCAAAGATATCTGTGAGGAAAGCCTTCTGGAAGATCTTAACTCAGAAAATGTTCTTGAGATGCTAAATGAGGCTTGGTTTTATCAATTGCACAAGTTAAAGAAAGGATGTTTGGTGttcttatttcaatttggtAAGATACATGATcttaaagatgaaataaataattttttccagcATGCAGATAGGGAGCTAATGCTGGAGATGTTTCAGGAGGTGCTTTCAATTTCGAACCCGGTATAA 981 0.4139 MGERVETLARLAQWKIDNFGPCSYKKSEPFKVGIWNWYFSIVRNRYLYIHLFPEPSPVSKDHPPYARFILRVSNAGSSRSFHISPVQEKLLRTHDDFVWPVDTAFVGRFIIDVEFLDLKICPPNGGETSSVWRSDGNSQSVASQNSTLHSLSRMLDEAIHADLTIITADGTLRAHKAILSASSPVFQSMFHHNLKEKESSTIHIEDMSLESCTALLSYIYGTIKQEDFWKHRLALLGAANKYDIGGLKDICEESLLEDLNSENVLEMLNEAWFYQLHKLKKGCLVFLFQFGKIHDLKDEINNFFQHADRELMLEMFQEVLSISNPV 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2979 326 SUPERFAMILY POZ domain 145 257 IPR011333 -
Ssu1g2979 326 Gene3D Potassium Channel Kv1.1; Chain A 129 289 IPR011333 -
Ssu1g2979 326 ProSiteProfiles BTB domain profile. 161 220 IPR000210 GO:0005515
Ssu1g2979 326 Pfam BTB/POZ domain 154 257 IPR000210 GO:0005515
Ssu1g2979 326 SMART BTB_4 161 259 IPR000210 GO:0005515
Ssu1g2979 326 PANTHER BTB/POZ DOMAIN PLANT PROTEIN 1 326 - -
Ssu1g2979 326 PANTHER OS08G0495500 PROTEIN-RELATED 1 326 IPR044714 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2979 Ssu-Chr1 78198112 78200307 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Ssu1g2979 BTB 5.1e-23 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2979 K10523 - gmx:100787262 608.986