Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2972 ATGGCTAACCTGATACAACAAGAAGCAAGGGAGGTTAATGGAGGTAGCAACCGCATAGTAGCCGTCGATGTGACCCCCTCTAACAACCTTTCTAAACCATACGATGCCTACCCAAATCACGAGAAACCTGGGTGGAGAAAGTTCCTGTCATATGTAGGTCCTGGTTTTCTGGTCTCCATGGCTTACCTTGATCCTGGAAACATGGAAACTGATCTGCAAGCTGGAGCTAACCACAAATATGAGTTGCTGTGGGTAATACTTATTGGACTGGTGTTTGCGCTAATAATTCAGTCATTGGCTGCGAATCTCGGCGTAACTACTGGCAAACACCTTTCAGAATTATGCAAAGCCGAATACCCATTATTGGTCAAGTACTGCCTATGGTTATTAGCCGAGCTCGCTGTCATAGCTGCAGACATACCTGAAGTGATTGGGACAGCTTTTGCGTTGAACATACTCTTCCACATCCCAGTCTGGGAAGGAGTTCTGGTGACCGGCTGTAGCACCCTCTTATTTCTGGGTCTGCAGAGATTCGGGGTAAGGAAGTTAGAACTGCTGATATCAATGCTAGTTTTGGTAATGGCTGGATGTTTCTTTGGGGAAGTGCGCTACGTAAAACCTCCTGCTTCTGATGTATTAAAAGGAATGTTCGTCCCAAAACTCAGCGGTCAAGGCGCCACAGCCGATGCTATTGCCCTTTTGGGTGCCCTTGTCATGCCACACAATCTTTTCCTCCACTCTGCTCTGGTACTGTCTAGAAAAGTACCCAGTTCCGTGCGTGGCATCAATGATGCATGTAGATACTTTCTCATAGAAAGTGGGTTCGCACTGTTTGTGgcatttttaatcaatgttgcAATGGTTTCTGTGTCGGGAACTGTTTGCTCTGCCGACAATCTTTCTGCAGAAAATGCTGATCACTGCAGCGATCTTACCCTTAACTCTGCTTCCTTCCTTCTCAAGAATGTGTTGGGACGGTCGAGCTCAACCATTTATGCCATAGCACTGCTAGCCTCAGGACAAAGTTCTGCTATATCTGGAACCTATGCAGGCCAATACATCATGCAGGGTTTCTTGGATATGAGGATGAAAAGTTGGATTAGAAACTTTGTGACTAGGTGCATTGCCATAACACCTAGTCTTATTGTTTCCATCATTGGTGGTTCTGCTGGGGCTGGTCGGCTTATCGTCATCGCATCGATGATACTTTCTTTTGAGCTTCCATTTGCTTTAATTCCACTCCTTAAGTTTAGCAGCAGCATTACCAAGATGGGACCTCACAAGAATTCTATGATTATCATTGTCATCTCATGGATACTAGGCTTGGGGATCATTGGTATCAATGTGTACTACCTCTCTACTGCCTTCGTGGGTTGGCTAATTCATAGCAGTCTACCAAAGGTTGCAAATGTGTTCATTGGGATCATAGTGTTTCCTCTAATGACACTTTATATTGTCGCAGTAATCTACCTAACCTTCAGAAAAGACACCGTTAAGACATATATTGAGACAAAGAATGAACCAGCCATGCAAACCCACATGGAAAAGGGGTTTATGGAAAATGGTCAATTAGAGTTGAATCAAGCTCCCTACAGAGAAGACTTGGCTGATATCCCACTACCAGAATAG 1629 0.4426 MANLIQQEAREVNGGSNRIVAVDVTPSNNLSKPYDAYPNHEKPGWRKFLSYVGPGFLVSMAYLDPGNMETDLQAGANHKYELLWVILIGLVFALIIQSLAANLGVTTGKHLSELCKAEYPLLVKYCLWLLAELAVIAADIPEVIGTAFALNILFHIPVWEGVLVTGCSTLLFLGLQRFGVRKLELLISMLVLVMAGCFFGEVRYVKPPASDVLKGMFVPKLSGQGATADAIALLGALVMPHNLFLHSALVLSRKVPSSVRGINDACRYFLIESGFALFVAFLINVAMVSVSGTVCSADNLSAENADHCSDLTLNSASFLLKNVLGRSSSTIYAIALLASGQSSAISGTYAGQYIMQGFLDMRMKSWIRNFVTRCIAITPSLIVSIIGGSAGAGRLIVIASMILSFELPFALIPLLKFSSSITKMGPHKNSMIIIVISWILGLGIIGINVYYLSTAFVGWLIHSSLPKVANVFIGIIVFPLMTLYIVAVIYLTFRKDTVKTYIETKNEPAMQTHMEKGFMENGQLELNQAPYREDLADIPLPE 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2972 542 TIGRFAM nramp: metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 46 421 IPR001046 GO:0016020|GO:0030001|GO:0046873
Ssu1g2972 542 PRINTS Natural resistance-associated macrophage protein signature 230 253 IPR001046 GO:0016020|GO:0030001|GO:0046873
Ssu1g2972 542 PRINTS Natural resistance-associated macrophage protein signature 368 385 IPR001046 GO:0016020|GO:0030001|GO:0046873
Ssu1g2972 542 PRINTS Natural resistance-associated macrophage protein signature 340 359 IPR001046 GO:0016020|GO:0030001|GO:0046873
Ssu1g2972 542 PRINTS Natural resistance-associated macrophage protein signature 400 419 IPR001046 GO:0016020|GO:0030001|GO:0046873
Ssu1g2972 542 PRINTS Natural resistance-associated macrophage protein signature 180 201 IPR001046 GO:0016020|GO:0030001|GO:0046873
Ssu1g2972 542 PRINTS Natural resistance-associated macrophage protein signature 155 174 IPR001046 GO:0016020|GO:0030001|GO:0046873
Ssu1g2972 542 PRINTS Natural resistance-associated macrophage protein signature 127 153 IPR001046 GO:0016020|GO:0030001|GO:0046873
Ssu1g2972 542 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 38 542 IPR001046 GO:0016020|GO:0030001|GO:0046873
Ssu1g2972 542 Hamap Divalent metal cation transporter MntH [mntH]. 38 456 IPR001046 GO:0016020|GO:0030001|GO:0046873
Ssu1g2972 542 PANTHER METAL TRANSPORTER NRAMP5 38 542 - -
Ssu1g2972 542 Pfam Natural resistance-associated macrophage protein 69 430 IPR001046 GO:0016020|GO:0030001|GO:0046873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2972 Ssu-Chr1 78085294 78091470 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2972 9 542 Inorganic Solute Cotransporters AT1G15960 58.736 0.0 635
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2972 K21398 - gmx:100787785 953.355