Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2969 ATGGCGCCAATCCTGCAGAGCTCTCAGCCATGGGTCGAGAAATACCGGCCAAAGCAAGTGAAAGATGTTGCCCACCAAGACGAAGTTGTTCGAGTACTAACAAACACCCTTGAAACTGGAAGTTGCCCCCACATGCTCTTCTATGGTCCTCCTGGCACTGGAAAAACAACTACTGCCCTTGCAATTGCCCATCAGCTTTTTGGGCCTGAGCTCTATAAGTCTAGGGTGCTGGAGCTGAATGCAAGTGATGATAGAGGGATTAATGTTGTTCGGacaaagataaaagattttGCTGCTGTGGCTGTTGGTACTAATCAGCGTAAGAATGGTTATCCTTGTCCACCATTTAAGATTATTGTTTTAGATGAGGCAGATTCAATGACGGAAGATGCTCAGAATGCCCTGAGGCGTACAATGGAAACTTACTCTAAAGTTACAAGGTTCTTTTTTATATGCAACTATGTTAGCAGGATTATAGAACCACTTGCTTCAAGATGTGCAAAATTCAGGTTCAAGCCATTATCAGAAGAAATCATGAGCAGCCGGATATTATACATCTGCAAAGAAGAGGGACTCTGTCTTGATGCTGAGGCTCTTTCAACCCTGAGTTCTATTTCTTATGGGGATCTTCGTCGGGCCATCACATACTTGCAGTCTGCAGCTCGCTTATTTGGATCTTCAATTTCTTCAGAGAATCTGATTTCTGTATCTGGGGTTGTTCCAACAAAGGTTGTGGAGGCACTTCTTAAAGCTTGCAAAAGTGGTAATTTTGATTTGGCAAACAAGGAAGTCAACAATTTCATTGCAGAGGGATATCCAGCTTCCCAGATGCTTACTCAGTTATTTGAGGCCATTGTTGAAGAAAATGACATATCTGATGAACAGAAAGCAAGAATATCCAAGAAGCTGGGTGAAGCTGATAAGTGCCTAGTTGATGGTGCTGATGAATACTTGCAACTTCTTGATGTGGTCAGCACTACAATTCAAGCTTTTAGTAACATGCCAGAAGGATTTGCTTACGAGTGTTAG 1029 0.4227 MAPILQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETGSCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGTNQRKNGYPCPPFKIIVLDEADSMTEDAQNALRRTMETYSKVTRFFFICNYVSRIIEPLASRCAKFRFKPLSEEIMSSRILYICKEEGLCLDAEALSTLSSISYGDLRRAITYLQSAARLFGSSISSENLISVSGVVPTKVVEALLKACKSGNFDLANKEVNNFIAEGYPASQMLTQLFEAIVEENDISDEQKARISKKLGEADKCLVDGADEYLQLLDVVSTTIQAFSNMPEGFAYEC 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2969 342 Gene3D - 175 239 - -
Ssu1g2969 342 Pfam Replication factor C C-terminal domain 241 325 IPR013748 -
Ssu1g2969 342 SMART AAA_5 41 190 IPR003593 -
Ssu1g2969 342 SUPERFAMILY post-AAA+ oligomerization domain-like 240 325 IPR008921 GO:0003677|GO:0006260
Ssu1g2969 342 Pfam ATPase family associated with various cellular activities (AAA) 45 172 IPR003959 GO:0005524|GO:0016887
Ssu1g2969 342 CDD HLD_clamp_RFC 174 233 - -
Ssu1g2969 342 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 8 232 IPR027417 -
Ssu1g2969 342 PANTHER REPLICATION FACTOR C SUBUNIT 4 7 330 - -
Ssu1g2969 342 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 7 330 - -
Ssu1g2969 342 Gene3D - 240 329 - -
Ssu1g2969 342 CDD AAA 26 166 - -
Ssu1g2969 342 Gene3D - 3 173 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2969 Ssu-Chr1 77990605 78000488 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2969 1 338 Core DNA Replication Machinery Family AT1G21690 79.351 0.0 560
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2969 K10755 - gmx:100788329 647.121