Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2968 ATGTCGAGCCAGAATCGCCGTTCGTCGTTTTCGTCCTCAACGACGTCGTCTTTGGCGAAACGCCATGCATCCGCAACCGCTTCCTCCTCGGAGAACAAGGCTTTGGCCGTTCCTACAAACATGGCCAAGAAGCGACCACCTCTCTCTAACCTCACCAACACCGTTGCTCACCGCAACTCATCCTCTTTGGTGCCGTGCCCAACTAAGGTTGCGAAGACCAAGAAAGAGGTTGTTCCAGCATGCTCAGGCAACAAAAGGCCCACATTGGCGAATGTTAAAGCAACTAGTGCAGTTGTTTTTCCTAAGGCTAATTCTTTCCCTGTAAGGAATGAAAATGCTGCTCCATCGGTTGCCACCGTTACTGTTCCTGCTCCGAGCATGGTGGTGGATGTTTCACCTAGTAAATCAGATGGAATGTCTGTTTCTATGGATGAGTCAATGTCTTCTTGTGATTCCTTCAAGAGTCCTGACATTGAATATGTGGACAATAGCGATGTTGGAGCGGTTAATTCAATTGAGAGGAAGACGTTCAGCAATCTCAACATATCTGATTCTACAAAACCAGCagGCAACATTTGTAGTAGAGACATACTAGTTGAGTTGGAAAAAGGGGACAAATTTGTCGATGTTGATAATAATTACGCAGATCCGCAGCTCTGTGCGTCCTTTGCTTGTGATATCTACAAGCACCTTCGTGCATCTGAGGCAAAGAAAAGGCCTTCCACAGACTTCATGGAGAGAATTCAAAAGGACATAAATCCCAGCATGCGTGCTATATTGATTGACTGGCTTGTGGAGGTGGCTGAAGAGTATAGACTAGTACCTGATACATTGTATTTGACAGTAAACTACATTGATCGGTATCTTTCAGGGAATGTGATGAACAGACAAAGGTTACAATTACTTGGTGTTGCCTCCATGATGATTGCCTCTAAATATGAGGAGATTTGTGCACCTCAGGTGGAGGAATTTTGTTACATAACTGATAACACGTACTTCAAAGAAGAGGTTTGGGTTGAATTCTTTTGCGGCTCAAGTTATCTGTTATTCTGTTTATACATAGTATTTGAATTGCTCACATCTCAAGCAAAACACAATCATTCGATGCAGGTTTTGCAGATGGAATCTGTTGTCTTGAATTTTCTCAAGTTCGAAATGACAGCCCCAACAGTAAAATGTTTCTTGAGAAGATTTGTACGGGCAGCTCAAGGAGTCGATGAGGTCCCTTCACTGCAACTAGAGTGCTTGACAAACTATATTGCCGAATTGTCTCTCTTGGAGTACAGTATGCTTTGTTATGCTCCATCACTTGTAGCCGCTTCTGCAATTTTCCTGGCCAAATTTATACTTTTCCCTTCGAAGAAACCATGGAATTCCACATTGCAGCATTACACGCTGTACCAGCCTTCTGATCTGTGTGTTTGTGTAAAGGATCTCCACCGTCTTTGTTGCAATAGCTCGAACTCTAATTTGCCTGCAATTAGGGAAAAATACAGTCAGCACAAGTACAAATATGTGGCCAAGAAGTACTGCCCTCCTTCAATACCTCCAGAATTTTTCCAGAATTGA 1569 0.4334 MSSQNRRSSFSSSTTSSLAKRHASATASSSENKALAVPTNMAKKRPPLSNLTNTVAHRNSSSLVPCPTKVAKTKKEVVPACSGNKRPTLANVKATSAVVFPKANSFPVRNENAAPSVATVTVPAPSMVVDVSPSKSDGMSVSMDESMSSCDSFKSPDIEYVDNSDVGAVNSIERKTFSNLNISDSTKPAGNICSRDILVELEKGDKFVDVDNNYADPQLCASFACDIYKHLRASEAKKRPSTDFMERIQKDINPSMRAILIDWLVEVAEEYRLVPDTLYLTVNYIDRYLSGNVMNRQRLQLLGVASMMIASKYEEICAPQVEEFCYITDNTYFKEEVWVEFFCGSSYLLFCLYIVFELLTSQAKHNHSMQVLQMESVVLNFLKFEMTAPTVKCFLRRFVRAAQGVDEVPSLQLECLTNYIAELSLLEYSMLCYAPSLVAASAIFLAKFILFPSKKPWNSTLQHYTLYQPSDLCVCVKDLHRLCCNSSNSNLPAIREKYSQHKYKYVAKKYCPPSIPPEFFQN 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2968 522 CDD CYCLIN 387 480 IPR013763 -
Ssu1g2968 522 CDD CYCLIN 256 335 IPR013763 -
Ssu1g2968 522 PANTHER CYCLINS 370 521 IPR039361 -
Ssu1g2968 522 PANTHER CYCLINS 33 337 IPR039361 -
Ssu1g2968 522 Gene3D - 240 337 - -
Ssu1g2968 522 Pfam Cyclin, C-terminal domain 389 508 IPR004367 -
Ssu1g2968 522 SUPERFAMILY Cyclin-like 215 337 IPR036915 -
Ssu1g2968 522 ProSitePatterns Cyclins signature. 257 288 IPR006671 -
Ssu1g2968 522 Gene3D - 375 515 - -
Ssu1g2968 522 SMART Cyclin_C_2 389 512 IPR004367 -
Ssu1g2968 522 PIRSF Cyclin_A_B_D_E 359 518 IPR039361 -
Ssu1g2968 522 PIRSF Cyclin_A_B_D_E 1 340 IPR039361 -
Ssu1g2968 522 PANTHER CYCLIN-A1-1 370 521 - -
Ssu1g2968 522 Pfam Cyclin, N-terminal domain 226 337 IPR006671 -
Ssu1g2968 522 Gene3D - 226 239 - -
Ssu1g2968 522 MobiDBLite consensus disorder prediction 45 63 - -
Ssu1g2968 522 MobiDBLite consensus disorder prediction 1 36 - -
Ssu1g2968 522 MobiDBLite consensus disorder prediction 1 63 - -
Ssu1g2968 522 PANTHER CYCLIN-A1-1 33 337 - -
Ssu1g2968 522 SUPERFAMILY Cyclin-like 389 514 IPR036915 -
Ssu1g2968 522 SMART cyclin_7 393 481 IPR013763 -
Ssu1g2968 522 SMART cyclin_7 262 344 IPR013763 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2968 Ssu-Chr1 77963082 77966463 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2968 4 522 Core Cell Cycle Gene Families AT1G44110 59.273 0.0 562
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2968 K06627 - gmx:100789565 837.795