LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu1g2965	ATGCATGCAGTTTGCACCATGAGCTTCTTGAGGCCTTCTGCACTGTACAACTTTCTGATCACTTACCCTGCACTGCGATGGATGCCATGTCAGAGTTGGGGCTTCCTTCGGTGGCCGGGTCTTGACGGCTTCTTCAGGCTTTTGGTGGTTGTGCTTCTCTGGTCCACGTTATCCGAGCTTCGCTACATACCCTCATCTTCTATGTACCCCACCCTTCGTGTTGGTGATCGAATTGTTGTGGAAAAGGCTTCATATTACATCAGGAGTCCTGCTATACGTGATATTGTAACATTTAAGGGTCCAACACAGCTCTCTGGAGAAAACACAGATGCTGTTTTTATTAAGAGAATTGTTGCAAAAGCAGGAGACACTGTTGAGGTTCATCATGGGACACTCTACATCAATGGTGTGGCTCAGCAGGAAGATTTCATAGCAGAGCCACCAACATACACAATGCAATTAACTTATGTGCCCAATGGCCATGTTTATGTGTTGGGGGATAATCGTAACAATAGTAATGATTCCCATGTGTGGGGACCACTTCCTATTAAGAACATAGTTGGAAGATATGTCACGTGCTATTATAGACCAACAAACATTTGA	603	0.4478	MHAVCTMSFLRPSALYNFLITYPALRWMPCQSWGFLRWPGLDGFFRLLVVVLLWSTLSELRYIPSSSMYPTLRVGDRIVVEKASYYIRSPAIRDIVTFKGPTQLSGENTDAVFIKRIVAKAGDTVEVHHGTLYINGVAQQEDFIAEPPTYTMQLTYVPNGHVYVLGDNRNNSNDSHVWGPLPIKNIVGRYVTCYYRPTNI	200

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu1g2965	200	CDD	S26_SPase_I	59	189	IPR019533	GO:0004252\|GO:0006465
	Ssu1g2965	200	PANTHER	CHLOROPLAST PROCESSING PEPTIDASE-LIKE	7	199	-	-
	Ssu1g2965	200	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	157	176	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Ssu1g2965	200	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	56	72	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Ssu1g2965	200	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	113	125	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Ssu1g2965	200	Gene3D	Umud Fragment, subunit A	65	196	-	-
	Ssu1g2965	200	ProSitePatterns	Signal peptidases I serine active site.	65	72	IPR019756	GO:0004252\|GO:0016021
	Ssu1g2965	200	PANTHER	SIGNAL PEPTIDASE I	7	199	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Ssu1g2965	200	TIGRFAM	sigpep_I_bact: signal peptidase I	46	195	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Ssu1g2965	200	Pfam	Signal peptidase, peptidase S26	45	194	IPR019533	GO:0004252\|GO:0006465
	Ssu1g2965	200	ProSitePatterns	Signal peptidases I signature 3.	162	175	IPR019758	GO:0004252\|GO:0016021
	Ssu1g2965	200	SUPERFAMILY	LexA/Signal peptidase	57	195	IPR036286	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu1g2965	Ssu-Chr1	77931857	77936092	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ssu1g2965	68	189	MADS-box Gene Family	AT1G29960	31.707	6.99e-09	50.4

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu1g2965	K03100		-	gmx:100306121	372.474

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Ssu1g2965	1	77931857	77936092	Ssu1g2965	1	77931857	77936092	ECH