Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2954 ATGGGCAGGGGTAAGATTGAGATCAAAAGGATTGAGAACTCAAGCAACAGGCAAGTTACCTACTCAAAGAGGAAGAATGGGATCCTTAAGAAGGCAAAGGAAATTAGTGTTCTATGTGACGCCCAAGTTTCCCTTATCATCTTTGGTGCCTCCGGAAAGATGCATGAATACATCACCCCCTCCACCACGTTGATTGACGTCCTGGACAGATACCAAAGAGCCTCTGGGAAGACGCTCTGGGACGCTAAGCATGAGAACCTCAGCAATGAAATTGATAGACTCAAAAAAGAGAATGACAGCATGCAAATTGAGCTCAGGCACTTGAAAGCGGAGGACATTACGTCACTGAATTACAAGGAACTGATGGCTCTAGAGGCTGCCCTTGAAAATGGCCTTAATGGCGTCCATGacaaaaagATGGAAGTGCACAGGATGTTGAAGAGAAACGTACGTGGGTCTTTTTCCAGCGTGTGTGGCAAGATTTTGGAGGAGCAAAATAAGGAACTCAATTTCCTTCTGCAACAGCATTTGGCACTAGAAGGTGTGGGAAACATGCATGGACAATGGATTTGA 573 0.4503 MGRGKIEIKRIENSSNRQVTYSKRKNGILKKAKEISVLCDAQVSLIIFGASGKMHEYITPSTTLIDVLDRYQRASGKTLWDAKHENLSNEIDRLKKENDSMQIELRHLKAEDITSLNYKELMALEAALENGLNGVHDKKMEVHRMLKRNVRGSFSSVCGKILEEQNKELNFLLQQHLALEGVGNMHGQWI 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2954 190 Gene3D - 13 102 IPR036879 GO:0003677|GO:0046983
Ssu1g2954 190 PANTHER MADS-BOX TRANSCRIPTION FACTOR 1 184 - -
Ssu1g2954 190 ProSiteProfiles K-box domain profile. 84 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Ssu1g2954 190 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Ssu1g2954 190 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 184 - -
Ssu1g2954 190 CDD MADS_MEF2_like 2 80 IPR033896 GO:0000977|GO:0045944
Ssu1g2954 190 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Ssu1g2954 190 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Ssu1g2954 190 Coils Coil 77 111 - -
Ssu1g2954 190 SUPERFAMILY SRF-like 2 96 IPR036879 GO:0003677|GO:0046983
Ssu1g2954 190 Pfam K-box region 81 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Ssu1g2954 190 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Ssu1g2954 190 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Ssu1g2954 190 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Ssu1g2954 190 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2954 Ssu-Chr1 77702528 77705620 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2954 1 143 MADS-box Gene Family AT5G20240 68.531 1.16e-68 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Ssu1g2954 K-box 4.6e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2954 K09264 - gmx:100795861 333.954
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2954 1 77702528 77705620 Ssu1g2954 1 77702528 77705620 ECH