Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2953 ATGGGGTCGTGTGGGAGATCTGCTACCATTGATGATCCCTCAGGAGGGGCTGTTATTGAGCAGCATTTGTGCTCAGAGATTCCGGAGCAGGTAGTTTCTGTGCAGGGGTATTGTTTAGAAGAGGCTTGCAATGTTGTGATGGACTCTAATGTTGACCTCTCCACTGTGACTGATGGTTGTGTGGGAGAGGACCGTGTGGGTTCTGCAAGCTGTGTTGATGTTACCGAGGGGTCCGGTGATGCTTTGCGTTTGGTGGGTGAATGTGAAAATGTTGATTTGTTGCCCCTGGAGAAAGCTGCTGAAGATGATTGTCAGAATTGTTTGGGGGTTTCTTGTGGGAGCATTGAAGTTCCCTGTCCAAAAAATGGCTCAGAGGGAGATTTTCAGGAGGAGGGCAACTTTGACCTGCCGTCGGGGTCCTTAACTACAAATGATTCGCTGAGGCATTGTGCTCAACAGGATGAACAGAAGGGTGATAAGAGCGATGTATTACCTGCAGCAGGAGATGGTTCGGCCGTTGTGGAAGGCAACAATGATGGCGCTGCTGTTCTTGCTGATGCTTTCAATTGTGTGCTTGATTTCAGGGACTCTAAAATGTCTTTGGAATCAGAATCCATGGCTGACTTGCTAGTTGATTGCAACCAGCAAAGTGAACAGGAGGAAATTATGGGAAATGCAGATCCGTTGATATCTCCTTCTCCAGCTATGGAAGTGCCATCAGGTGTATTATGTACAGACACAGAAGTAGAGAGCACAAGTGATCAGCCATGTGATCAGAAAGATGGTGAGGATCAGAATAGTACTTGTGAAGAAAAGGTTAAAGCTTTTGTTGATGAAGAAATCAACATTAATTCATGTGTAAAAATATCATCCTCTCCAGGTTGCCATAGGACTGTTGGGAGCTCACCTGTAGTTGATTCTCCTTCTCCGGCTATGGAAGCTGATGCTTGCAGGCAGATATCTCCTTCTCCAGCTATGAAAGTGCCATTAGGTGCATCATGTACAAATACAGAAGTAGAGAGCACAAATGATCAGCCATGTGATCAGAAAGATGGTGAGGATCAGAATAGTACTTGTGAAGAAAAGGTTAAAGCTTTTGTTGACGAAGAAGTCAACATTAATTCATGTGTAAAAATATCATCCTCTCCAGGTTGCCATAGGACCGTTGGGAGCTCACCTGTAGTTGATTCTCCTTGTGAGCTTGCCCTGTTGGATCCACGGCGTGAAATGAAGAATGGTATGCTGCAAATAGAAGATGATTTCTGCAAATTGAAGGATTGTTCCTCAGAGGAAACTACCGACTCTACCTTTAGAGAACCATTTTATCCAGAATCAGGTCTGCCCTCTGTTGCTTTAATTACCAACTGCTCTTCAAAGGATGTTCCTGATCTCCATTGTAAGGGTAATGGTGTctccattaataataataatgctgtGGACAATCCAGGACAGATGGATAATTATGGAAAAGAAGCTGTTGAAGTTGATTGGGTCACTGAAAGCATACCGTTACCTTCTCAAAGGAATTGTCGAAGAACTAAATTTGGCCATAAGACACAAACCAAAAAGGCTTCAAGAAAATGCAAGAACAAAGCCAAGGTGACAAGTGGGGGTATGAAGCTAAACTTAGAGGCTGCTAGAAGGAAAAGAAGTTGTTTCTCCAAACCAGCTCGTTCTTCTATCTGGGGATTGATTGGGAATATTGAACAGTTTTTTGAGCAAGATAATGAGCTTGGGGTTGGTGAAGCCGTGTGCCAAGAATTGGGGAAGGCTAGAAGCAAGCGTCAAAGTAGGAAAGCGGTTAAGAATGGTGCAAGTACTAGCTCATTGAGTTCAATACAGAAGTGTTCTGTTTCAACTACTCGTGTTCGTCTGAAGATCAAATTTGGGAAAGAAGTTGATTTAAGTTGCTCAAATGTCTTGATTCCAGAGTCCGTTGATGGCCTGGCTTCTGCTTCCCAGTTGGGGTCTGGTTCAAGTTCTCAGAAAGTAGCCAGCAATGCTGAAGAAGATAAAATTTCTGAAGTAGTGGGTTTGGGCTATTCAGAATCTTTCAACAATGACCTGGACAAGGATGGTCTTGTTCTAAATGGACAAGTAGCAAATAACCCCTTAGAAAATACTGAAATAACAGAGAAGTCAGATGGGGACGCAGAGGAACCTTGTCTTGCAGTTCCTCCAGAGAAGGTGGTTGAATCATTGATTCAACCTATCAATAACAAGGGTATGGATCCTGGAACTTCACCTGATTCAGAAGTTATCAATTCAATTCCTGAAGTCCAGATTGGAGAAAGACATCAAGAAGATGTACATCAAGCTGTTTTAGGTTCTTCTAAAGAGTTAAATTCTAAATTGGATTTTACCATCAGTAAGAGAGGAAAGAAGACGGACAAACTTATTTGTTCAAGTAATTGTATCACTGAAGATGGATCACAATGTCCACCTGGAAATAGTAGAGTGAAGCATTCAAAGAATCGCAGACGTAAGAAGAATTGCAGGGATGCGGTTAGCTCTTTGGAATTGCCTACTTTCACTGAGATAAGCAAATCTGTGAGCAGTAACGAATTGTCCTCAGAATCATTGCCCCTTTCTGTAGAGACTGAACTCGGAGGCTCCGCTGAGgctttgaaagttaaaaatcaCATGGAAGTTAAGACAAGTGGCAAACCATCTGTTGACCATGGATTTTCAGAATCCCAGGGTTTGGAGAATATGCTGTCTTCTGCAAGACCTTTGGGGCGTAAACTGCCTAAAAGTCTTAGACCTAGAAAAGTTAGCAAGACCAAATCTAAAGCTTCTGACTCAACTGGTGGGAAAAAGACTACTTGCGCAAGCAAGGAGAAACAGAAAAAGCCAATTAATAAGAGCAAAGTCAAGGGAAAAGGTGCCTCTCTTAAAGTTACGTGTGAAGTGGAAGATTACCCACATCCAGaAGCAAATGTTGGAAATCACAAGTTGGATGCTGTTGGAAAAATTAATGCTGATGACAACAGAGGATCGGTCAATGTATCTAATTTGGACATGCTGTCTGCTGTTGGTTTGGGGGAGCAACTTCTATCACCCCGTAATGCATGGGTGCGTTGTGATGATTGTCACAAGTGGCGGCGAATTCCAGCTGTGCTTGCAGACCAAATTGATGAAACTAACTGCACCTGGACATGTAAGGACAGCACTGATAAAGCCTTTGCTGATTGTGCTATCCCTCAAGAAAAGTCAAATGCAGAGATTAATGCAGAGTTGGGATTATCAGATGCCTCAGGTGAAGAAGATGCATATGAAGGCtccaaaaattttaaggaattaGAATATCGACCTCCATTAGTTTCCCAGGAGTCAACTTTTACCCACATTTTTACCAATGAATTTCTGCATCGTAGCCATAAAACTCAGACTATTGACGAGATAATGGTCTGTTATTGCAAGCCATCTCAAGAAGGAAAGTTGGGCTGTGGGGATGAATGTCTAAATCGGATTCTTAATATCGAATGTGTGCAAGGAACCTGCCCATGTGGGGACCATTGTTCCAACCAGCAGTTCCAAAAACGCATGTATGCTAGCCTGAAGTGGTTTAAATGTGGGAAAAAGGGTTATGGACTGAAGGCACTTCAGGAAGTAGCTCAAGGACAGTTTCTTATTGAATATGTTGGAGAGGTGCTTGATATGCAAACCTACGAGGCACGGCAAAGAGAATATGCTTTGAAGGGTCATCGACATTTCTATTTTATGACCTTGAATGGCAGTGAGGTGATAGATGCAAGTGCAAAAGGAAACTTGGGGCGTTTCATTAATCATAGTTGTGATCCTAATTGTCGGACAGAAAAGTGGATGGTGAATGGGGAAATCTGTATTGGACTGTTTGCATTGAGGGATATTAAGCAGGATGAAGAATTGACATTTGATTACAACTATGTAAGGGTTTTTGGTGCTGCTgccaaaaaatgttattgtggTTCACCTAATTGTCGAGGTTATATAGGTGGTGGTGATCCACTTAATGCTGAACTGATAGTTCAAAGTGATTCAGAAGAAGAATTTCCAGAACCTGTTATGCTTACTGAAGATGGTGAAATTGAAGATGCTGTACCTACACCcaagtattttaataatgttgATACACAATCTGCTAGACATATGTTAAAAGACAGGGATAGATTGGACAAGTCTACAGCTGCTATAGATTCAGATGGTTCTCCAGAGAAAAATAGTTCTATGAACCCTGCCTCTACTGTTTCTCTGTTGCACAGCTCAGTAGAAATGGAGGACTCAAAGGGTAAGTTACCATTGTCTGTTCGAGTTGAAGAAATTTCTCAACAAATGGAGGATGTAACAGGCAAACCCATGCCTGCTGTTCAACAAGGATATGAAAAGGAATCAGAGTTTGCAGACAAAACTTCCATTCAAAGATTAGAGACTACTTCTCCCCTTCCAACTGTCAGCAAAATGTTACAGAATTCTACTGGTAGTAATAGGGAGTCCAAGTCTGAAATAATTGAAGGCAGGAAGACTCCTAAGTTAAATGTTTCTGTTAAAAAGGGAAAGGTTCATGCTAATCCTCCAAATGGCCTTAAAGCTGAGGTGACAGCCAATCGATTGCAGGTGTCATCTATCAAACACAAAAAAGTAGAAGGTTCTTCCAATGGACGGTTTGAAGCAGTTCAGGAGAAACTTAATGAGTTGCTGGATGGAGATGGGGGAATaagcaaaagaaaaGATGCGACCAAAGGGTACTTGAAGCTTTTGTTTCTCACTGTGGCATCAGGTGATAGAAGCAATGGTGAAGCCATTCAAAGCAATCGAGATCTTTCCATGATCCTTGATGCCCTTCTCAAAACAAAATCTAGAGCAGTGCTGaatgatattattaacaaaaatgGTTTACAGATGTTACATAACATTATAAAGCAGTACAGACAGGACttcaaaaaaattccaataCTACGAAAGCTTCTTAAGGTCTTAGAGTACCTGGCAACAAGCAAGATATTGACATCTGAACATATTAATGGTGGTCCTCCTTGTCATGGAATGGAGAGCTTTAGAGAGTCAATGCTTTCTCTGACAGAGCATGATGACAAACAGGTCCATCAAATTGCTCGAAGCTTCCGAGACAGATGGTTTCCCAGACCCGTCAGAAAACATGGCTACATGGACAGGGATGACAATAGGGTGGAATCTCACAGAAGTTTCAACTGTAACAGATTTTCAGCATCACACAGTCATAGGCATGAGCAGGATTTAAGGCCTACAGAAGCAATTGATTGTAATCAGCAGTCGATACTTGTGACAACTTCAGTAGATGCCGATGCCCAGGAAGGCTGTTCTGCAGAGTCTCTAGATGGGGTTGAAATGAAAGGAACTAAAAAACGTAAGCGCAAAAGCCGATGGGATCAACCAGCAGAGACAAACTCCCATTCTGATGCGGTTATGAGCTCTATTGGTGAAAGCCAGAACATTCATGAGGATGTTCCACCAGGGTTTTCGTGTCCAGTAGGTTCATTAAATGCTTCCCTAAACTCTGGTAATAGTGCCTTGCAAAATGCAAGCCGTTCTGGATGTCCCTCTGATTTAGTTATTGGTCATCCAAAAGAGAAATTTAACTCTCGCTTGCCTGTCTCATATGGAATGCCATGGTCTGTTGCCCAGCAATATGGAACACCTCATGCTGAATTTGCAGAGTGTTGGGTCACTGCACCTGGCATGCCTTTTTACCCATTTCCTCCACTACCCCCGTATCCACGGGACAACAAAGACTGTCAACCTTCTAATACTACTAATGCTATGATAATTGATCAGCCTGCTGAAGTTAAGCAGTGGGATACCAGTGGTATGGTTAATTGTTGCTCAGATGATATGATTCCCAGCACAACTGGTGCTAACCCTGAAGACTCGAACCTTCTGTTTGAGGACAATAAACACATAACTAAACGATTGAAGGGTGATTCCTATGATTTGGGAAGGAGGTACTATAGACAGCAGAAATggaataattcaaaaatagatCGATCATGGTTTAGGAAGAATGCATGGAAATGTAATGAGAACAACTCTAGTGGTGATATGTGCAGTATAGATGTAGATGTACCAAAAGAGTCAAAAGTTACTTGTGATGCGGAGGATGCAATTTGTAGAGAGGAGAAAGGTggcaataatatttattag 6159 0.4129 MGSCGRSATIDDPSGGAVIEQHLCSEIPEQVVSVQGYCLEEACNVVMDSNVDLSTVTDGCVGEDRVGSASCVDVTEGSGDALRLVGECENVDLLPLEKAAEDDCQNCLGVSCGSIEVPCPKNGSEGDFQEEGNFDLPSGSLTTNDSLRHCAQQDEQKGDKSDVLPAAGDGSAVVEGNNDGAAVLADAFNCVLDFRDSKMSLESESMADLLVDCNQQSEQEEIMGNADPLISPSPAMEVPSGVLCTDTEVESTSDQPCDQKDGEDQNSTCEEKVKAFVDEEININSCVKISSSPGCHRTVGSSPVVDSPSPAMEADACRQISPSPAMKVPLGASCTNTEVESTNDQPCDQKDGEDQNSTCEEKVKAFVDEEVNINSCVKISSSPGCHRTVGSSPVVDSPCELALLDPRREMKNGMLQIEDDFCKLKDCSSEETTDSTFREPFYPESGLPSVALITNCSSKDVPDLHCKGNGVSINNNNAVDNPGQMDNYGKEAVEVDWVTESIPLPSQRNCRRTKFGHKTQTKKASRKCKNKAKVTSGGMKLNLEAARRKRSCFSKPARSSIWGLIGNIEQFFEQDNELGVGEAVCQELGKARSKRQSRKAVKNGASTSSLSSIQKCSVSTTRVRLKIKFGKEVDLSCSNVLIPESVDGLASASQLGSGSSSQKVASNAEEDKISEVVGLGYSESFNNDLDKDGLVLNGQVANNPLENTEITEKSDGDAEEPCLAVPPEKVVESLIQPINNKGMDPGTSPDSEVINSIPEVQIGERHQEDVHQAVLGSSKELNSKLDFTISKRGKKTDKLICSSNCITEDGSQCPPGNSRVKHSKNRRRKKNCRDAVSSLELPTFTEISKSVSSNELSSESLPLSVETELGGSAEALKVKNHMEVKTSGKPSVDHGFSESQGLENMLSSARPLGRKLPKSLRPRKVSKTKSKASDSTGGKKTTCASKEKQKKPINKSKVKGKGASLKVTCEVEDYPHPEANVGNHKLDAVGKINADDNRGSVNVSNLDMLSAVGLGEQLLSPRNAWVRCDDCHKWRRIPAVLADQIDETNCTWTCKDSTDKAFADCAIPQEKSNAEINAELGLSDASGEEDAYEGSKNFKELEYRPPLVSQESTFTHIFTNEFLHRSHKTQTIDEIMVCYCKPSQEGKLGCGDECLNRILNIECVQGTCPCGDHCSNQQFQKRMYASLKWFKCGKKGYGLKALQEVAQGQFLIEYVGEVLDMQTYEARQREYALKGHRHFYFMTLNGSEVIDASAKGNLGRFINHSCDPNCRTEKWMVNGEICIGLFALRDIKQDEELTFDYNYVRVFGAAAKKCYCGSPNCRGYIGGGDPLNAELIVQSDSEEEFPEPVMLTEDGEIEDAVPTPKYFNNVDTQSARHMLKDRDRLDKSTAAIDSDGSPEKNSSMNPASTVSLLHSSVEMEDSKGKLPLSVRVEEISQQMEDVTGKPMPAVQQGYEKESEFADKTSIQRLETTSPLPTVSKMLQNSTGSNRESKSEIIEGRKTPKLNVSVKKGKVHANPPNGLKAEVTANRLQVSSIKHKKVEGSSNGRFEAVQEKLNELLDGDGGISKRKDATKGYLKLLFLTVASGDRSNGEAIQSNRDLSMILDALLKTKSRAVLNDIINKNGLQMLHNIIKQYRQDFKKIPILRKLLKVLEYLATSKILTSEHINGGPPCHGMESFRESMLSLTEHDDKQVHQIARSFRDRWFPRPVRKHGYMDRDDNRVESHRSFNCNRFSASHSHRHEQDLRPTEAIDCNQQSILVTTSVDADAQEGCSAESLDGVEMKGTKKRKRKSRWDQPAETNSHSDAVMSSIGESQNIHEDVPPGFSCPVGSLNASLNSGNSALQNASRSGCPSDLVIGHPKEKFNSRLPVSYGMPWSVAQQYGTPHAEFAECWVTAPGMPFYPFPPLPPYPRDNKDCQPSNTTNAMIIDQPAEVKQWDTSGMVNCCSDDMIPSTTGANPEDSNLLFEDNKHITKRLKGDSYDLGRRYYRQQKWNNSKIDRSWFRKNAWKCNENNSSGDMCSIDVDVPKESKVTCDAEDAICREEKGGNNIY 2052
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2953 2052 SMART set_7 1185 1308 IPR001214 GO:0005515
Ssu1g2953 2052 Pfam SET domain 1196 1302 IPR001214 GO:0005515
Ssu1g2953 2052 Gene3D - 1016 1078 - -
Ssu1g2953 2052 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-36 SPECIFIC 517 1978 - -
Ssu1g2953 2052 MobiDBLite consensus disorder prediction 892 906 - -
Ssu1g2953 2052 ProSiteProfiles SET domain profile. 1185 1302 IPR001214 GO:0005515
Ssu1g2953 2052 MobiDBLite consensus disorder prediction 1478 1499 - -
Ssu1g2953 2052 MobiDBLite consensus disorder prediction 336 355 - -
Ssu1g2953 2052 Gene3D SET domain 1081 1335 IPR046341 -
Ssu1g2953 2052 MobiDBLite consensus disorder prediction 248 267 - -
Ssu1g2953 2052 ProSiteProfiles AWS domain profile. 1133 1183 IPR006560 GO:0005634|GO:0018024
Ssu1g2953 2052 CDD SET_SETD2 1184 1326 IPR044437 GO:0010452|GO:0046975
Ssu1g2953 2052 PANTHER SET DOMAIN PROTEINS 517 1978 - -
Ssu1g2953 2052 ProSiteProfiles Zinc finger CW-type profile. 1019 1073 IPR011124 GO:0008270
Ssu1g2953 2052 MobiDBLite consensus disorder prediction 253 267 - -
Ssu1g2953 2052 SMART PostSET_3 1310 1326 IPR003616 -
Ssu1g2953 2052 MobiDBLite consensus disorder prediction 1776 1806 - -
Ssu1g2953 2052 Pfam AWS domain 1148 1182 IPR006560 GO:0005634|GO:0018024
Ssu1g2953 2052 Pfam CW-type Zinc Finger 1025 1071 IPR011124 GO:0008270
Ssu1g2953 2052 MobiDBLite consensus disorder prediction 885 959 - -
Ssu1g2953 2052 SMART shorttest3 1133 1184 IPR006560 GO:0005634|GO:0018024
Ssu1g2953 2052 MobiDBLite consensus disorder prediction 1478 1492 - -
Ssu1g2953 2052 MobiDBLite consensus disorder prediction 811 833 - -
Ssu1g2953 2052 ProSiteProfiles Post-SET domain profile. 1310 1326 IPR003616 -
Ssu1g2953 2052 SUPERFAMILY SET domain 1113 1323 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2953 Ssu-Chr1 77634336 77654369 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2953 1168 1325 C2H2 Transcription Factor Family AT2G23740 33.714 9.00e-21 98.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Ssu1g2953 SET 1.1e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2953 - - gmx:100795379 3278.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2953 1 77634336 77654369 Ssu1g2953 1 77634336 77654369 ECH