Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2951 ATGCTGCAAACGGGTCCCGCCGGAGAACCCACCCGCGGCGGCTCCGGTGGCCGGACGGTGGTGGTGGGGGTGAAGATGGACTCACCCAGCAAGGAATTGCTGACGTGGGCTTTGGTCAAAGTTGCGCACCCCGGTGACACCGTGGTTGCTCTGCATGTGCTTGGGAACCATGAAACTGTGAATGGAGATGGGAAATCGTCGCTGCTTTCGCTTGTCAAGGCGTTTGACTCTGTTCTTGCTGTTTATGAAGGATTCTGCAAGTTGAAACAGGTGGATCTCAAACTCAAAATTTGCCGTGGTTCGTCAGCGAAGAAACTTTTGGTTCGAGAAGCGAATGGTTATTCCGCAACTCATGTTGTGGTTGGAACTACTCAAGGCCTGCATAAAATCCGGTCATCTACCTTTGTAGCTAAGTACTGTGCTAAAAAGTTGTCCAAGGATTCTTGTGTCCTTGCTGTTAACAATGGGAAAGTTGTGTTCAAGCGTGACAGCTCGCGGCCAAATGTTGCTGACTTACAAGGGATTGATCATCATCACGGAAATGGTTTGCTCGGTTCAATTCATTGGACACTCGGTAAGAGTACAAGAGTTCTAAGTGATGACAATGCAGGGACGGATGCTGATGAGAAGAAAACTGGCCAGATTTCGGATCGCAGTTTAGCAAGGTTTTTTTTGGATTCTACAGAAACTGTTAGAGAACCGAGCTGTTCAATTTGTGGCACAACCCTGGCATTGCCAGACCCTTCTTGCTACCAATCTGCACAAGGGTTTTCTGGTGATGATGGTAGAGAGAATTCTTTGGCTATAGTGCCTGTGCAACCCACTGTTGCAACAAAACTGGAATTGAAACCAGGTTGGCCACTACTACACCAGAGAATTTTATCGAACAGGCAATCTGCTGATAGATCATTGACGCGCCCTCATATTTCTGTGGTCCAGTGGGCAATGAGGTTGCCTTCTAGAAATCTTTCATATGCTGTAGATCGTGATGAAAAACCTAACATTTGTGATCAAGGTCAAGGTCAACCTGCAGCTTTAGATAGCGACAGTGGTGCTCTTGTTCCAGTAGATGCTGAAATAGGTACCACTTCTTCGCCCAAACGCAATTCAAAAAACATTCCTAAAGAATTGGAGGGCCTTCATGAGAAATACTCATCAACTTGCAGATTGTTTGAGTACCAAGAACTTGTAACGGCCACATCAGATTTCTCTCCTGAAAATTTGATTGGGAAAGGAGGAAGCAGTCAGGTTTATAGAGGCTGCCTTCCTGATGGCAAGGAACTTGCCGTCAAGATCCTAAAGCCTTCTGATGATGTATTGAAGGAATTTCTTCTGGAAATAGAAATTATCACTACCTTGCATCacaaaaacattatttcccTTCTGGGGTTCTGCTTTGAGAATGGCAATCTTCTTCTGGTTTATGATTTCTTATCAAGAGGAAGCCTTGAAGAGAACCTTCATGGGAATATGAAAAATTCACTTGCTTTTGGTTGGTCCGAGAGATATAAGGTAGCAGTGGGTGTTGCCGAGGCTTTAGATTACCTACATTCTAAAGATGATCAACCTGTGATCCATCGGGATGTAAAGTCATCAAATGTATTGTTATCTGAGGATTTTGAACCCCAgCTCTCTGATTTTGGACTGGCAAAATGGGCATCAACATTGCCATCACATGTAACCTGCACAGATGTTGCTGGAACCTTCGGTTACTTGGCTCCTGAATACTTTATGTACGGCAAAGTAAATGATAAGATTGATGTCTACGCATTTGGTGTCGTGCTCCTTGAGCTTCTTTCAGGGAGAAAGCCCATAAGTGGTGATTATCCAAAAGGTCAAGAGAGTCTTGTTATGTGGGCAAGTCCAATTCTAAATGGTGGAAAGGTGTTACAATTGTTAGATCCTAGTTTGCGTGATAACTATGATCATGAGGAGATGGAAAAGATGGTCTTGGCAGCCACTCTCTGTATCAAACGTGCTCCAAGGGCTAGGCCTCAAATGAGCCTTATCTCAAAGCTCCTTCAAGGTGACGCTGATGCAATCAGGTGGGCAAGGTTAGAAGTTGATGCTTTGGATGCACCAGAAATGCTTGATGATGAAGCGTGTCCACCCACTAATCTACAGTCACATCTTAATCTTGCACTGCTTGATGTGGAGGATGACTCACTCTCCACGTGCAGTGTTGAGCAGGGTCTCACATTGGAGGACTACTTGAGAGGCAGGTGGAGCCGCGGATCAAGCTTTGACTGA 2250 0.4498 MLQTGPAGEPTRGGSGGRTVVVGVKMDSPSKELLTWALVKVAHPGDTVVALHVLGNHETVNGDGKSSLLSLVKAFDSVLAVYEGFCKLKQVDLKLKICRGSSAKKLLVREANGYSATHVVVGTTQGLHKIRSSTFVAKYCAKKLSKDSCVLAVNNGKVVFKRDSSRPNVADLQGIDHHHGNGLLGSIHWTLGKSTRVLSDDNAGTDADEKKTGQISDRSLARFFLDSTETVREPSCSICGTTLALPDPSCYQSAQGFSGDDGRENSLAIVPVQPTVATKLELKPGWPLLHQRILSNRQSADRSLTRPHISVVQWAMRLPSRNLSYAVDRDEKPNICDQGQGQPAALDSDSGALVPVDAEIGTTSSPKRNSKNIPKELEGLHEKYSSTCRLFEYQELVTATSDFSPENLIGKGGSSQVYRGCLPDGKELAVKILKPSDDVLKEFLLEIEIITTLHHKNIISLLGFCFENGNLLLVYDFLSRGSLEENLHGNMKNSLAFGWSERYKVAVGVAEALDYLHSKDDQPVIHRDVKSSNVLLSEDFEPQLSDFGLAKWASTLPSHVTCTDVAGTFGYLAPEYFMYGKVNDKIDVYAFGVVLLELLSGRKPISGDYPKGQESLVMWASPILNGGKVLQLLDPSLRDNYDHEEMEKMVLAATLCIKRAPRARPQMSLISKLLQGDADAIRWARLEVDALDAPEMLDDEACPPTNLQSHLNLALLDVEDDSLSTCSVEQGLTLEDYLRGRWSRGSSFD 749
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2951 749 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 18 124 - -
Ssu1g2951 749 ProSitePatterns Serine/Threonine protein kinases active-site signature. 524 536 IPR008271 GO:0004672|GO:0006468
Ssu1g2951 749 SMART serkin_6 403 674 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g2951 749 SUPERFAMILY Protein kinase-like (PK-like) 384 676 IPR011009 -
Ssu1g2951 749 ProSitePatterns Protein kinases ATP-binding region signature. 409 431 IPR017441 GO:0005524
Ssu1g2951 749 Gene3D HUPs 17 154 IPR014729 -
Ssu1g2951 749 Gene3D Phosphorylase Kinase; domain 1 364 477 - -
Ssu1g2951 749 PANTHER OS08G0249100 PROTEIN 11 732 - -
Ssu1g2951 749 CDD USP_Like 19 153 - -
Ssu1g2951 749 CDD STKc_IRAK 409 676 - -
Ssu1g2951 749 Pfam Protein kinase domain 406 665 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g2951 749 ProSiteProfiles Protein kinase domain profile. 403 674 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g2951 749 Gene3D Transferase(Phosphotransferase) domain 1 478 685 - -
Ssu1g2951 749 PANTHER - 11 732 - -
Ssu1g2951 749 Pfam Universal stress protein family 18 146 IPR006016 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2951 Ssu-Chr1 77596611 77599992 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2951 390 670 Trihelix Transcription Factor Family AT1G68690 44.755 3.30e-73 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Ssu1g2951 Pkinase 7e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2951 - - aprc:113846853 1103.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2951 1 77596611 77599992 Ssu1g2951 1 77596611 77599992 ECH