Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2947 ATGCCTCCGCGGCGGTGCACGGCGTCTGCGGCGGTGCAGATGGGCAGCGAAAGCGACGAATTGGAGGAGTTCATCATGCGGTGCCTCTCCTGCTCGGAGGAGTACGACGCCGACGACTCGGGAACCTGCAAGGAGTGTTACCAAGAGGCCAACGAGGCCGAGGAGGAGCTCCGCCGCGAGATCGAAGAGCTCAAGTCCAAGGTCTCCTTCCTCACCCTCCCATCTCCCACCCTCAATCCTTCCGCCGCCGATGTCATCCTCCTTCCCGCCGACGACTCCTCCGCCGCCCCCATTCCCGCTCACAACAACGTTCTGGTTAGTCGCTCTCCTGTTTTCAAAGCAATGCTTGAGAATGATATGACGGAAAGGCGGAGTGGCACCATCAAGATATCTGATGTATCATATGATACCCTTCGTGCTTTTGTTAACTATTTATACACTGCTGAAGCATGCCTTGATAACCAAATGGCCTGTAACCTGTTGGCCTTAGGAGAGAAGTATCAGGTGAAGCATCTTAAGACATATTGTGAGAAGTATTTGATCGCCAAAATGAATTGGGATAAAGCTATTGCAAACTATGCCTTTGCATATCAATACAATTGCAAACAATTACTAAGTGCGGCCTTGGCAGTGATCTTAGACAACATGGACTGCCTCACTCAAAATGAATATTATGCGGAGCTGGTGGACAATCATCCTCGTCTTGTTGTGGAAATATATGAAACATATCTTGTCAAACAATTAAATACTGCAGGCGCCTTTAGGTTACAGGAACAGAGCTAG 783 0.4968 MPPRRCTASAAVQMGSESDELEEFIMRCLSCSEEYDADDSGTCKECYQEANEAEEELRREIEELKSKVSFLTLPSPTLNPSAADVILLPADDSSAAPIPAHNNVLVSRSPVFKAMLENDMTERRSGTIKISDVSYDTLRAFVNYLYTAEACLDNQMACNLLALGEKYQVKHLKTYCEKYLIAKMNWDKAIANYAFAYQYNCKQLLSAALAVILDNMDCLTQNEYYAELVDNHPRLVVEIYETYLVKQLNTAGAFRLQEQS 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2947 260 PANTHER GH01369P 24 252 - -
Ssu1g2947 260 ProSiteProfiles BTB domain profile. 83 154 IPR000210 GO:0005515
Ssu1g2947 260 Gene3D - 185 258 - -
Ssu1g2947 260 Coils Coil 43 67 - -
Ssu1g2947 260 Pfam BTB/POZ domain 82 182 IPR000210 GO:0005515
Ssu1g2947 260 Gene3D Potassium Channel Kv1.1; Chain A 42 184 IPR011333 -
Ssu1g2947 260 CDD BACK 193 228 - -
Ssu1g2947 260 SMART BTB_4 83 184 IPR000210 GO:0005515
Ssu1g2947 260 SUPERFAMILY POZ domain 78 181 IPR011333 -
Ssu1g2947 260 CDD BTB_POZ_ZBTB_KLHL-like 83 167 - -
Ssu1g2947 260 PANTHER SPECKLE-TYPE POZ PROTEIN 24 252 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Ssu1g2947 BTB 6.6e-21 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2947 K10523 - gmx:100794118 405.601
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2947 1 77526758 77528862 Ssu1g2947 1 77526758 77528862 ECH