Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2946 ATGGCGACCGAGGATGGAACAGGCGATGCTGATAAGACTGAATGTGATGAACGAGTTCAGTGTTTGAAAAGTGAGGCCATGAATGGTGGGGTGGTAATTGCGGATGGGAATTGTGTTACTGAAGAAGGTCGGTGCTTGAAAAGTGAAGCCATGAATAATGGGGTGGAAATTGCTGATGGAAATGGTGTTGCTGAAGAGGGTAGGCTCTTGAAAAGTGAACCTGTTTGTAATGGGGTGGCTGTTGCGGAAAAAGGGGATTCTGGTGGAGTTGAATGTTTGCGAACTTATAAGAGGCGTAAGAAGTCAAGTTCAGAAGGCAAAGTTCAGGAACAACACAGAGAAAGCGTGGAAGCTGCAAGTCATATAGCAGATCagGTTGTGAAGAAACCATGTGATGTAACTTTTGGCAATACTTCAGATGGTTGTTCCCATGGACAGTGGGGAAATATTGTACTAAAGCATTTATATCAGTCATTAGGTGATGGCAATGGCGGCATAGAGGGGTGCATAAGGGAAGCACTTATTCATCATCCTAAACTTAATCGTGCCACTACAGTTACGgaaacttttaaaattgacaaaGTTGGACAAGAATGCCCTTTGCAATTTGGGCGGCTTTCTCATAGAACAGGGAATGAAGCTAATGGGCATGCAGATGTCATGTGTAATGGATGTTCTACTGAATCACCTGGCCATGGTGTGACTGAGATGTGTCAGCGTGTGCTCAGTAATATCTTAACCTCAGAAAAATTCAGTTCATTATGTAAGACTTTACTTGAAAATTTCCGGGGAATGAAGCCTGAAAGTGTATTTGACTTTACCATCATGAACTCAAGGATGAAGGAGCAAGCTTATGAACAATCACCAACACTCTTCTTGTCAGATATTCAACAGgtTTGGAGAAAGCTTCAAGACACTGGTAACGAGATTGTTACTCTTGCCAAGAGCCTCTCCAACATGTCAAGAACTTCCTACTCTGAGCTGGTGGGAGTTCCAGCACAGAGCACATTTCAAGATGAGAAGCAAGTgTTCTGCAACCGGGAATTTGACTCTCACATGAAAccagaagagagagaagaatgtGCTATGTACAAAATTTGCAGTTGCAGATGTTGTGGAGAGAAGGCAGATGGCACAGACTGTTTGGTTTGTGATTCATGTGAGGAGATATACCATGTGTCCTGTATTGAGCCTGCAGTGAAAGAAATACCCCACAAAAGCTGGTATTGTGCCAATTGTACTGCTAAGGGGATCGGATCTCCACATGAGCATTGTGTGCTATGCGAAAGGTTAAATGATACAAAGACCCCAAATGACGTAATTGGTGATGAAAACTTTCCTTCAATTGAAGAAACACAAAATGAAGAGAATTCAAATTGCACCTCTGATGGGATTCAAGTTTCCATAGGTGAGAAAAAAACACCCAAttgcaaaatatgtggaaaTGAAGTGGATGgtggaaaaataaaactatgtGGCCATCAGTTTTGCTCCCATAAATACTACCATGTAAGGTGTTTAACAAATAAGCAGTTAAGGTCGTATGGTCACTGTTGGTACTGCCCCTCTTGTTTATGCCGGGTTTGCTTCGCTGATAGAGATGATGATCAGATTGTTCTTTGTGATGGCTGTGATCATGCATATCACATCTATTGCATGAAACCTCCGCGGACTTCTATTCCAAGAGGGAAATGGTTCTGCCAAAAATGTGATGCTGGAATACAAGCAATCCACCAGGCTAAAAAGGCATATGAGAGTAAAAAGCCCAGAAGAACTGGCGAAGGTGATTCAATGCCAAATGCTATTCTTGAAAAGAAACACGACAATAAACGTGTACGAGAAATGGAAAGAGGTGGAGCAATGGACATGCTTTTAACTGCAGCCAATACTctgaattttgaagagaaagagGTGGCAATCCAGATTGAGTCAGAGAGAACATGA 1944 0.4043 MATEDGTGDADKTECDERVQCLKSEAMNGGVVIADGNCVTEEGRCLKSEAMNNGVEIADGNGVAEEGRLLKSEPVCNGVAVAEKGDSGGVECLRTYKRRKKSSSEGKVQEQHRESVEAASHIADQVVKKPCDVTFGNTSDGCSHGQWGNIVLKHLYQSLGDGNGGIEGCIREALIHHPKLNRATTVTETFKIDKVGQECPLQFGRLSHRTGNEANGHADVMCNGCSTESPGHGVTEMCQRVLSNILTSEKFSSLCKTLLENFRGMKPESVFDFTIMNSRMKEQAYEQSPTLFLSDIQQVWRKLQDTGNEIVTLAKSLSNMSRTSYSELVGVPAQSTFQDEKQVFCNREFDSHMKPEEREECAMYKICSCRCCGEKADGTDCLVCDSCEEIYHVSCIEPAVKEIPHKSWYCANCTAKGIGSPHEHCVLCERLNDTKTPNDVIGDENFPSIEETQNEENSNCTSDGIQVSIGEKKTPNCKICGNEVDGGKIKLCGHQFCSHKYYHVRCLTNKQLRSYGHCWYCPSCLCRVCFADRDDDQIVLCDGCDHAYHIYCMKPPRTSIPRGKWFCQKCDAGIQAIHQAKKAYESKKPRRTGEGDSMPNAILEKKHDNKRVREMERGGAMDMLLTAANTLNFEEKEVAIQIESERT 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2946 647 SUPERFAMILY FYVE/PHD zinc finger 362 415 IPR011011 -
Ssu1g2946 647 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 468 576 IPR013083 -
Ssu1g2946 647 ProSiteProfiles Zinc finger PHD-type profile. 366 416 IPR019787 -
Ssu1g2946 647 SMART PHD_3 476 525 IPR001965 -
Ssu1g2946 647 SMART PHD_3 368 414 IPR001965 -
Ssu1g2946 647 SMART PHD_3 526 571 IPR001965 -
Ssu1g2946 647 PANTHER HISTONE ACETYLTRANSFERASE 149 635 - -
Ssu1g2946 647 PANTHER D4, ISOFORM A 149 635 - -
Ssu1g2946 647 Gene3D - 255 416 - -
Ssu1g2946 647 ProSiteProfiles Zinc finger PHD-type profile. 523 573 IPR019787 -
Ssu1g2946 647 SUPERFAMILY FYVE/PHD zinc finger 525 574 IPR011011 -
Ssu1g2946 647 Pfam PHD-finger 526 571 IPR019787 -
Ssu1g2946 647 Pfam PHD-finger 369 415 IPR019787 -
Ssu1g2946 647 SMART ring_2 526 570 IPR001841 -
Ssu1g2946 647 SMART ring_2 477 524 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2946 Ssu-Chr1 77504731 77511820 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2946 525 595 C2H2 Transcription Factor Family AT3G01460 45.070 5.97e-14 73.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Ssu1g2946 PHD 8e-13 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2946 - - gmx:100795906 1103.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2946 1 77504731 77511820 Ssu1g2946 1 77504731 77511820 ECH