Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2917 ATGGATAGCCCCCCTTCTCCATCTTACGTCGTTGTTGCATGTGATGCCACGAGGGACCGCACAGAACACGAAATCAAACTCGTTGTTGATCATGTTCGGGCCAGAGGTGTCTTTCTCTCTGCTGGTGACAAGTTGCTTGTGCTCTGTGTATTGCACAAGGTGTCTCACCCTATGGGGTACCAGACATTAGCATGTCCCGAGTCTTTTGCTGGCACCAACTTTCGTGCAATGGAGGAAGAAGTCAAAAAGAAAGTTGATGCATATGCAAGTGAGCTTTTATCAAGTAATGAAGATTTTGAAAGAGAAGGGGTTAGTGTCGAAGTTAAAGTCACCGCGGGTTTTCCGATTAAACAGGTTGTTTTACAAGAGGTTACGAACTATAATGCATCTTGGATAATACTCGACAGACATCTTCGGCGCGACCTGAGATACCACCTTAACAAGATGCCATGTAAGGTTGCATTGGTTAAAGATGACTTGTCTCTGGATATCTGGAGATCTCACTATGCACATGACACAAAGGTCACAGAAACAAAGTTTGTATATTCTTTGTCAAAGTTTGTGTCGCTATCAGATTGTCAAAGTATTGAAGCCATTGAGCAGTCTATTATCTCTTGCAAAAGTTATCCCAATTCTATAGCTTCTTCTGATAGCTCTAGTACGATTAGGAGCTATATAAAGCAGTCAAATGCTAACAGGTCACGGGAGCACGATTCCTTATCAGATTTTGGATCTTCTTCTAAGCAAGAAAGATCAGGTATAAGCATCAAAGGAGAATATAGGCCTTTCATTGCTTCTCAGATTGACCACAAGCAAAGCCAAAGTGCCTTTCTGCCAAAACATTCAGATGCACCGCTTCTATGTACTGGCTGTGGGACAAGAACTGAGTTGTTTATCAAGGAGTCAATGAGGTTCAGCTATTCTGACATACAACTTGCaacaaatgatttttcaaagGATAACTTATTAGGTGAAGGTGGATATGGTCACGTATATAAGGGTGTGCTTAAAGATGGACAGCAAATTGCCGCAAAGGTAAGGAAAGAAGAAAGTTCACAAGGGTTTTCTGAATTTCATTCTGAGGTGTACGTCCTAAGTTTTGCTCGACACAAGAACATAGTGATGCTGTTGGGTTACTgttgcaaagaaaagaaaaatatcctgatttatgaatatatttgcAACAAGTCTCTCAAGTGGCATTTATTTGaaaataatgAAGCGGTTCTTGAGTGGCACCAAAGGTATGCTATTGCCATTGGGACTGCAAAGGGATTGCGTTTTCTACATGAGGAATGCCGTGGTGGTCCTATTATTCATCGGGACATGCGACCAAGCAATATACTTCTCACCCATGATTTTGTTCCCTTGCTAGGTGACTTTGGCCTTGCCAAATGGAAGACTGGTGATGATACTTTGCAAACAAGGATAATGGGCACAGCAGGATACCTTGCTCCTGAGTATGCTGAAGACGGTATTGTTTCCGTGCTAACGGATGTGTATTCTTATGGCATTATTCTGTTACAATTAATATCAGGACGCCAAGTTGCCAATTCCAATAATCCAGAACAACAACAATCTATCCGACAATGGGCTGAGCCAATGATTGAAAAGTTGGCTTTACATGAACTGATTGACACTCGTCTAGGGGAATCATATGACACGTATGAACTCTACCTCATGGCTAAAGCAGCATATTTCTGTGTGCAAAGGAAGCCCGAGATGCGTCCATCAATGGGAGAGGTTGTGCGACTTCTTGAGGGAGAAAGTAGCCACTTCCACTCCTTGGAAGATCAATTTGTACCTAGTTATAACGATTGA 1821 0.4102 MDSPPSPSYVVVACDATRDRTEHEIKLVVDHVRARGVFLSAGDKLLVLCVLHKVSHPMGYQTLACPESFAGTNFRAMEEEVKKKVDAYASELLSSNEDFEREGVSVEVKVTAGFPIKQVVLQEVTNYNASWIILDRHLRRDLRYHLNKMPCKVALVKDDLSLDIWRSHYAHDTKVTETKFVYSLSKFVSLSDCQSIEAIEQSIISCKSYPNSIASSDSSSTIRSYIKQSNANRSREHDSLSDFGSSSKQERSGISIKGEYRPFIASQIDHKQSQSAFLPKHSDAPLLCTGCGTRTELFIKESMRFSYSDIQLATNDFSKDNLLGEGGYGHVYKGVLKDGQQIAAKVRKEESSQGFSEFHSEVYVLSFARHKNIVMLLGYCCKEKKNILIYEYICNKSLKWHLFENNEAVLEWHQRYAIAIGTAKGLRFLHEECRGGPIIHRDMRPSNILLTHDFVPLLGDFGLAKWKTGDDTLQTRIMGTAGYLAPEYAEDGIVSVLTDVYSYGIILLQLISGRQVANSNNPEQQQSIRQWAEPMIEKLALHELIDTRLGESYDTYELYLMAKAAYFCVQRKPEMRPSMGEVVRLLEGESSHFHSLEDQFVPSYND 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2917 606 PANTHER RECEPTOR-LIKE KINASE 8 598 - -
Ssu1g2917 606 ProSiteProfiles Protein kinase domain profile. 317 601 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g2917 606 ProSitePatterns Tyrosine protein kinases specific active-site signature. 438 450 IPR008266 GO:0004672|GO:0006468
Ssu1g2917 606 MobiDBLite consensus disorder prediction 227 252 - -
Ssu1g2917 606 Gene3D Transferase(Phosphotransferase) domain 1 394 600 - -
Ssu1g2917 606 CDD STKc_IRAK 323 588 - -
Ssu1g2917 606 PANTHER OS01G0253100 PROTEIN 8 598 IPR045271 GO:0004714|GO:0006468
Ssu1g2917 606 Gene3D HUPs 6 157 IPR014729 -
Ssu1g2917 606 Gene3D Phosphorylase Kinase; domain 1 289 392 - -
Ssu1g2917 606 Pfam Protein kinase domain 318 582 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g2917 606 MobiDBLite consensus disorder prediction 230 244 - -
Ssu1g2917 606 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 12 158 - -
Ssu1g2917 606 SUPERFAMILY Protein kinase-like (PK-like) 301 586 IPR011009 -
Ssu1g2917 606 ProSitePatterns Protein kinases ATP-binding region signature. 323 345 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2917 Ssu-Chr1 76717925 76722920 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2917 305 587 Trihelix Transcription Factor Family AT5G38560 44.828 9.01e-79 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Ssu1g2917 Pkinase 1.1e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2917 - - vun:114163670 1063.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2917 1 76717925 76722920 Ssu1g2917 1 76717925 76722920 ECH