Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2908 ATGTCTAAGGGAAGAGGCAGTGCATCTTTACCTACGGTTGTGGTCACTGGGATTTCACTACTGTGCCTGTTGGTTCTGGTGGAACGTGCTAATGCAGCAACATACACCGTTGGAGGATCTGGTGGATGGACCTTCAACACTAATACTTGGCCAAATGGAAAAAGGTTCAGGGCTGGTGATGTGCtagTCTTCAACTATGACTCAACGACCCACAATGTGGTTGCTGTGGACAGAAGCGGATACAGCAGCTGCAAGACACCAGCGGGTGCTAAAGTGTTCAGTTCAGGGAAGGACCAAATCAAACTAGCAAGAGGGCAGAACTACTTCATATGCAACAATCCTGGTCACTGCGAATCCGGAATGAAAGTTGCCATTAACGCAGTGTGA 387 0.4806 MSKGRGSASLPTVVVTGISLLCLLVLVERANAATYTVGGSGGWTFNTNTWPNGKRFRAGDVLVFNYDSTTHNVVAVDRSGYSSCKTPAGAKVFSSGKDQIKLARGQNYFICNNPGHCESGMKVAINAV 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2908 128 PANTHER BLUE COPPER PROTEIN 9 126 IPR039391 GO:0009055
Ssu1g2908 128 ProSitePatterns Type-1 copper (blue) proteins signature. 105 121 IPR028871 -
Ssu1g2908 128 Gene3D - 33 128 IPR008972 -
Ssu1g2908 128 SUPERFAMILY Cupredoxins 33 127 IPR008972 -
Ssu1g2908 128 PANTHER BASIC BLUE-LIKE PROTEIN 9 126 - -
Ssu1g2908 128 ProSiteProfiles Phytocyanin domain profile. 33 128 IPR003245 GO:0009055
Ssu1g2908 128 CDD Plantacyanin 33 127 IPR041844 -
Ssu1g2908 128 Pfam Plastocyanin-like domain 43 121 IPR003245 GO:0009055
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2908 Ssu-Chr1 76387343 76387838 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2908 7 128 Phytocyanin Superfamily AT1G17800 39.062 1.35e-26 95.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2908 - - gmx:100788635 236.498