Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2907 ATGGAGGATTCTTCAGCAGGTGAAGACACCAAGACTTGTCCCCGTGGCCACTGGAGACCCGCTGAAGATGAAAAGCTAAGACAACTTGTTGAACAATATGGTGCCCAAAACTGGAATTCAATTGCTGAGAAGCTCCAAGGAAGATCggGGAAAAGTTGCAGGTTAAGGTGGTTCAATCAGCTTGACCCCAGAATTAACAGAAGACCATTCacagaagaggaagaagagaggtTACTCGCAGCTCACCGCATTCACGGGAACAAGTGGGCACTCATAGCGAGGCTTTTTCCGGGTCGAACAGATAATGCTGTGAAGAACCACTGGCACGTTATAATGGCGAGAAAGCAAAGGGAACAGTCCAAGTTGTGTGGGAAGAGAAGTTTCCAAGACGTTTATAACGATTCCACCACTTCCTCGTTCCTCGAGAAAAGAACACAACAATCTCAAGACCTATTGTTTAGTGCGAGATTCGGGTTAGAGAATGGAAGATTCTTTGACTTTCGGAACCTCGATAATAATAaggataacaataataataataggatagTAGCAGATACTCCCTCTAGTTCTCTGGCGTCTTGGAATTTTGCTTCTGTGCCAACCACCACAAACGGTTCTACTGTAGGGGATGCACTTAGAAAAGGAGGGAGAGACTATTTCAACAGTTCTTCCTCTTGCTCTTCTAATATTTATCTCTCAGAATGTTCCAGAAGCTCAGATAGGTCGTTTCTTTACAGAGTTTATCCAAATCCTGCATTCTCGCTTCCCAACTACAAGAGGGTTGTCCCAAGTCCTTTTAGATTCCTCGGTTCTTCTGATGATGGAAGGATAAAGAGGGATAACTTGATGAGTTTCTGTGATAACTCATCCACATTCACAAAGTTGAGGGATTCTACGGAGAAAGATCATCAACAAACAAATGAAGATGAGACCAACATCGAGCCCAAAGAAGTTCCTTTCATTGATTTTCTTGGTGTGGGTGTCTCTTCATCATAA 996 0.4147 MEDSSAGEDTKTCPRGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDPRINRRPFTEEEEERLLAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIMARKQREQSKLCGKRSFQDVYNDSTTSSFLEKRTQQSQDLLFSARFGLENGRFFDFRNLDNNKDNNNNNRIVADTPSSSLASWNFASVPTTTNGSTVGDALRKGGRDYFNSSSSCSSNIYLSECSRSSDRSFLYRVYPNPAFSLPNYKRVVPSPFRFLGSSDDGRIKRDNLMSFCDNSSTFTKLRDSTEKDHQQTNEDETNIEPKEVPFIDFLGVGVSSS 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2907 331 ProSiteProfiles Myb-like domain profile. 15 61 IPR001005 -
Ssu1g2907 331 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Ssu1g2907 331 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Ssu1g2907 331 Pfam Myb-like DNA-binding domain 18 78 - -
Ssu1g2907 331 Gene3D - 15 66 - -
Ssu1g2907 331 Gene3D - 69 131 - -
Ssu1g2907 331 PANTHER MYB PROTEIN-RELATED 6 329 - -
Ssu1g2907 331 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 61 IPR017930 -
Ssu1g2907 331 SUPERFAMILY Homeodomain-like 14 108 IPR009057 -
Ssu1g2907 331 MobiDBLite consensus disorder prediction 1 21 - -
Ssu1g2907 331 CDD SANT 18 59 IPR001005 -
Ssu1g2907 331 SMART sant 14 63 IPR001005 -
Ssu1g2907 331 SMART sant 66 114 IPR001005 -
Ssu1g2907 331 CDD SANT 69 109 IPR001005 -
Ssu1g2907 331 PANTHER TRANSCRIPTION FACTOR MYB56 6 329 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2907 Ssu-Chr1 76372302 76373630 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2907 13 122 MYB Transcription Factor Family AT1G17950 84.545 2.11e-67 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ssu1g2907 Myb_DNA-bind_6 2.4e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2907 K09422 - gmx:100817328 509.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2907 1 76372302 76373630 Ssu1g2907 1 76372302 76373630 ECH