Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2906 ATGCAGTCTAAAATTCTGTTTGAATTGTATAACAGGCGAAGCATGTCATTAGTTAGATCTGCTGATCTAGCTCCTAGGTCATATGAGAATGCTAAGCTCTACTCACTAAAGGGAACTGATGTTAGACCAGGCTTGTCCTCCCAAATTTTTGGTCCTGATAAGCTTAGAAGCATGTCCATGACAGATACTTACTCCAGCGAGAGTTACGAGAAGTATTTCCATGACTCTCAAACTGAAGAACTGATACAACCATCTAGTTCCAGCATCTCTAGAAGTTCAATTGACCCTAACGTAGCCTCTTCTTACCAGCTCAGAGCCAATTCAGGAGCTTCTATGGTTGCTAATAACCCATTTGATACTTCTTTCATGTCTACAAGGCATCATGATGGTTATCAGTCCAACTTTGGATCAGATTTGATGGAGAATGGAAGCCTGGATTCACGCAACGATGATGGTCTAATGAGATTAAAACTACAAGCATTGGAGAGGGCATTGCTTGATGATAGTGATGctgaggaggaggaggatgaggaggaagaggaagataTATTTGAGGCTGCTCAAAGCATGGAAATTGATCCCGACATTGCTGAATGGGCCGATTCCATGCAGAATATGCTGCTCCAGGATTCACCAAAGGAGTACTCATCTTCAGATTCCAATATTAGCAGCATCAGCAGCACCAAAGAAATATCACAAACTTGTCGGACCCCCAAGCAACTGCTTTATGAATGTGCTATTGCACTTTCAGAtggaaatgaagagaaagggTCATCTATGATAAACAATCTTCGGCAGATGGTCTCAATTCAGGGAGAGCCTTCTCAAAGAATTGCAGCCTATATGGTTGAGGGACTTGCAGCTCGCCTGGCCGAATCCGGCAAAAGTATTTACAAAGCGCTGAGATGCAAGGAACCTCCTTCTTCAGACCGTCTAGCAGCCATGCAGATACTGTTTGAAGTTTGCCCATGTTTCAAATTTGGATTTATTGCTGCTAACAATGCAATTACAGAAGCAGTGAAAGATGACATGAAGATTCATATCATAGATTTTGACATCAATCAAGGAAGTCAGTACATAAATCTAATCCAAACACTTGCTTCAAGGTCAAGTAAGCCACCCCATGTTAGATTGACTGGGGTTGATGATCCTGAGTCTGTGCAGCGATCTGTTGGAGGCCTAAAGATCATAGGACAAAGGCTAGAAAAACTTGCAGAAGCACTTGGTTTGCCATTTGAGTTTCGAGCAGTGGCATCAAGGACTTCCATTGTCACCCCAGCAATGCTTAGCTGTAGTCCAGGTGAAGCACTTGTGGTGAACTTTTCATTCCAGCTTCATCACATGCCTGATGAGAGTGTTTCAACAGTAAACGAACGGGACCAACTTCTTCGCTTGGTGAAGAGCTTGAATCCAAAGCTTGTGACAGTTGTGGAGCAAGATGTGAACACTAACACCACCCCCTTCTTACCTAGATTTGTTGAGGCCTACAATTATTACTCTGCTGTGTTTGAGTCGCTTGATGTTACTCTTCCTAGAGAAAGTCAGGACAGGATGAATGTTGAAAGGCAATGCTTAGCTAGGGACATTGTCAATGTTGTTGCATGTGAGGGTGAGGATAGGATAGAACGGTATGAAGTTGCAGGAAAATGGAGAGCAAGGATGACAATGGCTGGCTTCACTTCATCCCCAATGAGCACAAATGTGACTGATGAAGTCCGAAAACTCATTAAGGTGGTGTATTGCGACAGGTACAAGATAAAGGAGGAAATGGGTGCACTTCATTTTGGTTGGGAAGACAAAAACTTGATTGTTGCTTCAGCATGGAAGTTAccatga 1836 0.415 MQSKILFELYNRRSMSLVRSADLAPRSYENAKLYSLKGTDVRPGLSSQIFGPDKLRSMSMTDTYSSESYEKYFHDSQTEELIQPSSSSISRSSIDPNVASSYQLRANSGASMVANNPFDTSFMSTRHHDGYQSNFGSDLMENGSLDSRNDDGLMRLKLQALERALLDDSDAEEEEDEEEEEDIFEAAQSMEIDPDIAEWADSMQNMLLQDSPKEYSSSDSNISSISSTKEISQTCRTPKQLLYECAIALSDGNEEKGSSMINNLRQMVSIQGEPSQRIAAYMVEGLAARLAESGKSIYKALRCKEPPSSDRLAAMQILFEVCPCFKFGFIAANNAITEAVKDDMKIHIIDFDINQGSQYINLIQTLASRSSKPPHVRLTGVDDPESVQRSVGGLKIIGQRLEKLAEALGLPFEFRAVASRTSIVTPAMLSCSPGEALVVNFSFQLHHMPDESVSTVNERDQLLRLVKSLNPKLVTVVEQDVNTNTTPFLPRFVEAYNYYSAVFESLDVTLPRESQDRMNVERQCLARDIVNVVACEGEDRIERYEVAGKWRARMTMAGFTSSPMSTNVTDEVRKLIKVVYCDRYKIKEEMGALHFGWEDKNLIVASAWKLP 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2906 611 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 24 609 IPR030011 GO:0003700|GO:0005634
Ssu1g2906 611 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 24 609 IPR005202 -
Ssu1g2906 611 Coils Coil 161 181 - -
Ssu1g2906 611 ProSiteProfiles GRAS family profile. 229 609 IPR005202 -
Ssu1g2906 611 Pfam GRAS domain family 239 609 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2906 Ssu-Chr1 76321495 76323330 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2906 1 609 GRAS Transcription Factor Family AT1G21450 60.359 0.0 709
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Ssu1g2906 GRAS 4.8e-136 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2906 - - gmx:100788103 1030.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2906 1 76321495 76323330 Ssu1g2906 1 76321495 76323330 ECH