Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2904 ATGGTGCCTCCGGGGCCACCCACTCCAATTGGTGGTGCCCAGTCTGTTTCGCCCTCTCTTTTGAGATCGAATTCGGGGATGTTAGGAGCTCAGGGGGGTCCCATGCCGTTGCAGACAGCTTTCCCTTCACTTGTGTCACCACGCACTCAGTTCAACAACATGAACATCCTAGGAAATATGTCCAATGTAACTTCCATACTGAATCAGTCTTTCCCAAATGGAGTTCCAAATCCTGGGCTTTCTGGTCCAGGAAGTAGCCGGCGTGGAGGGATTGATACTGGAGCTGAAACAGACCCTCTTTCCAGTGTTGGCAATGGAATGAGCTTCAATAATTCTTCGTTGACGTTTGTACAGTCAAATATAGTAAACGCTGCTTCCTCTGGTCAAGGTCAGGGTCAACAATTTTCAAACCCTTCTAGTAACCAGCTGTTGCCAGATCAACAGCATTCCCAACAGCTTGAACCTCAAAATTTCCAACATGGTCAGCAGTCAATGCAACAGTTCTCTGCTCCTCTGAATACACAGCAGCCGCAGCAGCATTTTCAATCAATTCGAGGAGGGATAGGCGGTATGGGACCGGTAAAGCTGGAGCCCCAGGTAAACAACGATCAACTTGGACAGCAGCAGCCACAGCAATTGCAATCTTTGAGGAATCTTGCTTCAGTGAAATTGGAACCACAACAAATGCAGACAATGAGAACTCTGGGACCTGTTAAACTGGAGCCCCAGCATTCTGATCAATCATTATTTTTgcagcagcaacaacagcagcagcaacaacagcaacaacaacagtTCCTCCACATGTCAAGTCAATCGTCTCAGGCTGCTGCTGCCCAGATCAATCTTTTGCGCCATCACAGGCTTTTACAGTTACAACAACAACACCAGCAGCAACAACTCTTGAAGGCAATGCCTCAACAACGGTCCCAACTACCACAGCAATTTCAGCAGCAGAATATGCCAATGAGATCTCCTGCGAAACCAGCATATGAACCAGGGATGTGTGCTAGGCGGCTGACACATTACATGTATCAGCAACAACATAGACCTGAAGATAACAATATTGAGTTCTGGAGAAAGTTTGTTGCTGAGTATTTTGCCCCTAATGCCAAGAAGAAATGGTGTGTTTCTATGTATGGAAGTGGGAGACAAACAACTGGAGTTTTCCCTCAGGCCTAtgaattctttaaatattttcaggATGTATGGCACTGTGAAATATGTAATCGCAAGCCTGGCCGTGGATTTgaAGCAACTGTCGAGGTTCTTCCCCGGCTTTTCAAGATAAAGTATGAAAGTGGTACTTTGGAAGAACTACTTTATATTGACATGCCTCGTGAATATCATAATTCCTCTGGTCAGATTGTTCTAGATTATGCAAAAGCAATACAAGAAAGTGTTTTTGAGCAACTTCGTGTTGTTCGTGATGGTCAACTTCGAATAGTTTTCTCTCCAGACCTGAAGATATGTTCTTGGGAATTTTGTGCTCGGCGCCATGAGGAGCTCATCCCCAGGAGATTGTTAATACCGCAGGTTAGTCAGCTTGGGGCGGTTGCTCAAAAATACCAGGCTTTAACTCAAAATGCAACACCCAATGTATCTGTTCCagaattacaaaataattgcaATATGTTTGTTGCATCAGCCCGTCAGTTGGCTAAAGCCTTAGAAGTACCATTGGTTAATGATTTAGGATATACGAAGAGATATGTGCGCTGCCTACAGATATCAGAAGTGGTAAATAGTATGAAAGACTTGATAGATTACAGCAGAGAAACTGGGGCTGGACCTATGGAGAGCTTAGCAAAATTCCCTCGGAGAACAAGTGGTTCATCTGGACCTCGTAATCAAGCACAACAGCATGAAGAACAATTAcagcagcagcaacaacaaaTGGTGGCCCATAACTCAAATGGTGATCAAAACTCAGTACAAGCTGCTGCCATGCAAATTGCTTCTAGCAATGGTATGGTTAGTGTAAATAACACTGTCAACTCAGCATCCACATCAACCACCACAAGCACAATTGTTGGACTTCTCCATCAGAACTCTATGAATTCTAGACAGCAAAATTCAATGAACAATGCAAGCAGTCCATATGGAGGTAGTTCTGTTCAGATTCCATCCCCAGGTTCCTCCAATACAGTGCCACAGGCCCAGCCAAACTCATCCCCTTTTCAATCACCAACACCATCCACTTCTAACAACCTCCCACAAACATCTCACCCTGCTTTAACATATGCCAATCACATGAGTGCAACAAACTCACCAGCTAATATTTCCCTGCAACAGCAGCAGCCATCTATTTCTGGTGAACCTGACCCTAGTGATGCCCAGAGCTCAGTCCAGAAAATCATACATGAGATGATGTCCTCCCAGATTAACGGCACAGGTGGAATGATCAGTGTTGGATCTCTTGGAAATGACGTGAAGAATGTAAATGGCATTCTGCCAGTGAGTGCCAGTACAGGGCTCAATGGTGGCAATGGCCTGGTGGGTAACGGTGCATTGAACAGTAATTCAGGCGTTGGGGTTGGTAGTTATGGCACAATGGGTCTTGGTCAATCCACTATGCCTAATGGAATCAGAGCTGCTATGGTAAATAATTCACTCATGAATGGAAGGGGAGGAATGGCGTCTCTTGCTCGTGATCAAGCTATGAATCATCAACAGGAGTTGTCAAACCAACTACTTAGTGGGCTAGGGGCAGTAAATGGTTTTAATAGTCTTCAATTTGATTGGAAACCTTCTCCTTGA 2760 0.433 MVPPGPPTPIGGAQSVSPSLLRSNSGMLGAQGGPMPLQTAFPSLVSPRTQFNNMNILGNMSNVTSILNQSFPNGVPNPGLSGPGSSRRGGIDTGAETDPLSSVGNGMSFNNSSLTFVQSNIVNAASSGQGQGQQFSNPSSNQLLPDQQHSQQLEPQNFQHGQQSMQQFSAPLNTQQPQQHFQSIRGGIGGMGPVKLEPQVNNDQLGQQQPQQLQSLRNLASVKLEPQQMQTMRTLGPVKLEPQHSDQSLFLQQQQQQQQQQQQQQFLHMSSQSSQAAAAQINLLRHHRLLQLQQQHQQQQLLKAMPQQRSQLPQQFQQQNMPMRSPAKPAYEPGMCARRLTHYMYQQQHRPEDNNIEFWRKFVAEYFAPNAKKKWCVSMYGSGRQTTGVFPQAYEFFKYFQDVWHCEICNRKPGRGFEATVEVLPRLFKIKYESGTLEELLYIDMPREYHNSSGQIVLDYAKAIQESVFEQLRVVRDGQLRIVFSPDLKICSWEFCARRHEELIPRRLLIPQVSQLGAVAQKYQALTQNATPNVSVPELQNNCNMFVASARQLAKALEVPLVNDLGYTKRYVRCLQISEVVNSMKDLIDYSRETGAGPMESLAKFPRRTSGSSGPRNQAQQHEEQLQQQQQQMVAHNSNGDQNSVQAAAMQIASSNGMVSVNNTVNSASTSTTTSTIVGLLHQNSMNSRQQNSMNNASSPYGGSSVQIPSPGSSNTVPQAQPNSSPFQSPTPSTSNNLPQTSHPALTYANHMSATNSPANISLQQQQPSISGEPDPSDAQSSVQKIIHEMMSSQINGTGGMISVGSLGNDVKNVNGILPVSASTGLNGGNGLVGNGALNSNSGVGVGSYGTMGLGQSTMPNGIRAAMVNNSLMNGRGGMASLARDQAMNHQQELSNQLLSGLGAVNGFNSLQFDWKPSP 919
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2904 919 PANTHER LIM DOMAIN-BINDING PROTEIN 1 918 IPR029005 -
Ssu1g2904 919 MobiDBLite consensus disorder prediction 597 644 - -
Ssu1g2904 919 MobiDBLite consensus disorder prediction 688 744 - -
Ssu1g2904 919 MobiDBLite consensus disorder prediction 69 106 - -
Ssu1g2904 919 Pfam LIM-domain binding protein 339 602 IPR029005 -
Ssu1g2904 919 MobiDBLite consensus disorder prediction 12 26 - -
Ssu1g2904 919 MobiDBLite consensus disorder prediction 762 782 - -
Ssu1g2904 919 MobiDBLite consensus disorder prediction 300 324 - -
Ssu1g2904 919 PANTHER LIM-DOMAIN BINDING PROTEIN/SEUSS-RELATED 1 918 - -
Ssu1g2904 919 Coils Coil 619 639 - -
Ssu1g2904 919 MobiDBLite consensus disorder prediction 300 328 - -
Ssu1g2904 919 MobiDBLite consensus disorder prediction 127 176 - -
Ssu1g2904 919 MobiDBLite consensus disorder prediction 1 34 - -
Ssu1g2904 919 MobiDBLite consensus disorder prediction 606 644 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2904 Ssu-Chr1 76306699 76314391 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2904 1 915 C2H2 Transcription Factor Family AT1G43850 60.000 0.0 769
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2904 - - gmx:100799771 1442.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2904 1 76306699 76314391 Ssu1g2904 1 76306699 76314391 ECH