Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2891 ATGTCGAGCACAGCTGGTCAAGTCATCAAATGCAAAGCCGCGGTTGCATGGGAGGCAGGGAAGCCACTGGTGATTGAAGAAGTAGAGGTGGCGCCACCACAGGCTGGTGAAGTGCGTTTGAAGATCCTCTACACCTCTCTTTGCCACACTGATGTTTACTTTTGGGAAGCCAAGGGCCAGACACCATTGTTTCCTCGTATATTTGGTCATGAAGCTGGAGGGATTGTGGAAAGCGTAGGCGAGGGTGTGACTCATCTCAAACCAGGGGACCATGCCCTCCCTGTGTTTACCGGGGAGTGTGGGGAATGCCCACATTGTAAGTCAGAGGAGAGCAACATGTGTGATCTGCTCAGGATCAACACTGATCGGGGTGTCATGATCCATGACACCCAAACAAGATTTTCTATAAAGGGACAGCCCATTTACCATTTTGTCGGAACCTCTACATTCAGTGAATACACTGTTGTCCATGCTGGATGTGTTGCCAAAGTCAACCCTGCTGCCCCACTTGACAAAGTTTGTATTCTCAGCTGTGGAATATGCACAGGTCTTGGGGCTACTATCAATGTTGCAAAACCAAAACCTGGTTCTTCTGTTGCTATTTTTGGACTTGGAGCTGTTGGCCTTGCTGCTGCTGAAGGGGCAAGAATTTCTGGTGCATCAAGAATTATTGGGGTTGATTTAGTTTCCAGCCGATTTGAAGGAGCTAAGAAGTTTGGGGTCAATGAATTTGTGAACCCAAAAGATCATGACAAGCCTGTACAAGAGGTAATTGCGGAAATGACAAATGGGGGCGTGGATCGTGCTGTTGAATGTACTGGCAGCATTCAGGCCATGATCTCAGCATTCGAATGTGTCCACGATGGTTGGGGTGTTGCTGTACTTGTTGGAGTGCCAAACAAAGATGATGCATTCAAAACTCATCCAATGAATTTCTTGAATGAGAGGACTCTAAAGGGTACCTTCTATGGTAACTACAAACCCCGCACTGATCTTCCTGCAGTTGTGGAGAAGTACATGAATGGGGAATTGGAACTGGAGAAATTCATCACTCACACAGTTCCATTCTCGGAGATTAACAAAGCTTTTGATTACATGCTGAAAGGGGAGTCCATCAGATGCATCATTCGTATGGAGcattaa 1143 0.4663 MSSTAGQVIKCKAAVAWEAGKPLVIEEVEVAPPQAGEVRLKILYTSLCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEGVTHLKPGDHALPVFTGECGECPHCKSEESNMCDLLRINTDRGVMIHDTQTRFSIKGQPIYHFVGTSTFSEYTVVHAGCVAKVNPAAPLDKVCILSCGICTGLGATINVAKPKPGSSVAIFGLGAVGLAAAEGARISGASRIIGVDLVSSRFEGAKKFGVNEFVNPKDHDKPVQEVIAEMTNGGVDRAVECTGSIQAMISAFECVHDGWGVAVLVGVPNKDDAFKTHPMNFLNERTLKGTFYGNYKPRTDLPAVVEKYMNGELELEKFITHTVPFSEINKAFDYMLKGESIRCIIRMEH 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2891 380 SUPERFAMILY GroES-like 4 186 IPR011032 -
Ssu1g2891 380 Gene3D - 183 321 - -
Ssu1g2891 380 CDD alcohol_DH_plants 9 377 - -
Ssu1g2891 380 PANTHER ALCOHOL DEHYDROGENASE 4 378 - -
Ssu1g2891 380 PANTHER ALCOHOL DEHYDROGENASE-RELATED 4 378 - -
Ssu1g2891 380 Pfam Alcohol dehydrogenase GroES-like domain 36 163 IPR013154 -
Ssu1g2891 380 SUPERFAMILY GroES-like 328 377 IPR011032 -
Ssu1g2891 380 Pfam Zinc-binding dehydrogenase 206 333 IPR013149 -
Ssu1g2891 380 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 69 83 IPR002328 GO:0008270|GO:0016491
Ssu1g2891 380 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 169 343 IPR036291 -
Ssu1g2891 380 Gene3D - 19 370 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2891 Ssu-Chr1 76134648 76138090 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2891 1 370 Monolignol Biosynthesis Gene Families AT1G72680 24.800 5.39e-15 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2891 K18857 - gmx:100783858 755.362
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2891 1 76134648 76138090 Ssu1g2891 1 76134648 76138090 ECH