Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2889 ATGAAAAGGTGTTGGTTGGTTGGGGTCTTGATTGTGGTGGGGTGTGCCTGCTTGTTGGGCACTGTTGGGGTAGAAGGGTACCCTGCTGAGGATCTAATAGTGAGGTTGCCTGGCCAACCCAAGGTTGGGTTCAGGCAATATGCAGGGCATATTGATATAGATGTCAAGCATGGGAGGAGCCTGTTCTATTATTTTGTGGAGGCTGAGCATGACTATGACAAGAAGCCCCTCACCCTTTGGCTCAATGGAGGCCCGGGATGTTCCTCAATTGGAGGAGGTGCCTTTACTGAGTTGGGTCCCTTTTATCCCAAAGGTGATGGACGTGGTCTCCGAAGAAATTCAATGTCTTGGAATAGAGCGTCCAACCTCCTCTTCGTGGAGTCCCCAGCTGGAGTTGGTTGGTCATACTCAAACACAACTACAGATTACAACACTGGAGACGCGTCCACAGCCAATGATATGCTTCTGTTCATGCTGAAATGGTACAAGAAGTTTCCTTCCTACAAATCAAGGGAGCTGTTCCTTACTGGAGAAAGCTATGCAGGACATTATATACCACAGTTAGCTAATGCTATTTTGGACCACAATGCTCATTCAACTGGtttcaaattcaatattaaaggAGTTGCTATTGGAAACCCACTTCTGAAACTTGATCGTGATTCACAAGCAACATATGAATACTTCTGGTCACACGGAATGATTTCCGATGAAATTGGCCTTGTCATTATGAATGATTGCGATTTTGATGATTATGTCTTTGCAAGTCCACATAATGTGTCTAAATCATGCAACGATGCAATAAATGAAGCAAATGACATTGTTGGCGATTATATAAACAACTATGATGTGATTCTGGATGTTTGTTATCCATCCATAGTTGAACAAGAACtgagattgaaaaagataGCTACTAAAATAAGCATAGGTGTAGATGTCTGTATGACTTACGAAAGACGTTTTTATTTCAACCTCCCTGAGGTTCAGAAGGCTCTCCATGCAAACCGTACCAATCTTCCGTACCCATGGTCTATGTGCAGTGGTGTCTTAAATTATAGCGACACTGATCCTAACATAAATATCCTTCCAGTTCTCAAAAGGATAGTTCGAAACCATATTCCAGTATGGGTTTTCAGTGGAGACCAAGATTCTGTTGTGCCACTACTAGGTTCTCGAACACTCATTCGTGAACTAGCTCATGAACTGAAGTTCAAGATTACTGTTCCATATGGAGCTTGGTTCCACAAAGGCCAGgtTGGAGGTTGGGTAACCGAGTATGGAAACTTGTTGACTTTTGCCACTGTACGGGGAGCTGCTCACATGGTACCATATGCACAACCTTCAAGGGCACTCCATCTCTTCAGTTCATTTGTGCGTGGAAGGAGATTGCCAAACACAACACGTCCTTCAATTGATTAA 1419 0.4271 MKRCWLVGVLIVVGCACLLGTVGVEGYPAEDLIVRLPGQPKVGFRQYAGHIDIDVKHGRSLFYYFVEAEHDYDKKPLTLWLNGGPGCSSIGGGAFTELGPFYPKGDGRGLRRNSMSWNRASNLLFVESPAGVGWSYSNTTTDYNTGDASTANDMLLFMLKWYKKFPSYKSRELFLTGESYAGHYIPQLANAILDHNAHSTGFKFNIKGVAIGNPLLKLDRDSQATYEYFWSHGMISDEIGLVIMNDCDFDDYVFASPHNVSKSCNDAINEANDIVGDYINNYDVILDVCYPSIVEQELRLKKIATKISIGVDVCMTYERRFYFNLPEVQKALHANRTNLPYPWSMCSGVLNYSDTDPNINILPVLKRIVRNHIPVWVFSGDQDSVVPLLGSRTLIRELAHELKFKITVPYGAWFHKGQVGGWVTEYGNLLTFATVRGAAHMVPYAQPSRALHLFSSFVRGRRLPNTTRPSID 472
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2889 472 Gene3D alpha/beta hydrolase 28 290 IPR029058 -
Ssu1g2889 472 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 15 - -
Ssu1g2889 472 Pfam Serine carboxypeptidase 38 460 IPR001563 GO:0004185|GO:0006508
Ssu1g2889 472 Gene3D - 314 350 - -
Ssu1g2889 472 ProSitePatterns Serine carboxypeptidases, serine active site. 175 182 IPR018202 GO:0004185
Ssu1g2889 472 SUPERFAMILY alpha/beta-Hydrolases 25 467 IPR029058 -
Ssu1g2889 472 PRINTS Carboxypeptidase C serine protease (S10) family signature 430 443 IPR001563 GO:0004185|GO:0006508
Ssu1g2889 472 PRINTS Carboxypeptidase C serine protease (S10) family signature 161 186 IPR001563 GO:0004185|GO:0006508
Ssu1g2889 472 PRINTS Carboxypeptidase C serine protease (S10) family signature 126 136 IPR001563 GO:0004185|GO:0006508
Ssu1g2889 472 PRINTS Carboxypeptidase C serine protease (S10) family signature 113 125 IPR001563 GO:0004185|GO:0006508
Ssu1g2889 472 Gene3D - 361 460 - -
Ssu1g2889 472 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 6 467 IPR001563 GO:0004185|GO:0006508
Ssu1g2889 472 PANTHER CARBOXYPEPTIDASE 6 467 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Ssu1g2889 Ssu-Chr1 76114599 76118287 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2889 320 463 Calmodulin-binding Proteins AT2G22960 25.694 9.07e-11 59.3
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2889 K16297 - gmx:100815723 909.827