Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2882 ATGAAGGTGCTTTCTTATTCTAGCTTACTTGGGACGATCCTTAGTGCAATAGTCTCGTGGGTAATGGAGAGGGACATAAATGCTTGGAAGTTAAAGCGTAACAAGGATCTGATTCTCATTGTTCTAACTGCATTAGTTGGGGGTGTGATTCGTCCCAATATTCAAGTATGGTTCACTCGCATGAAGGGTCCACTTTATGTGTCACTTTTCAAGCCCTTTGGTATCGCCTTTGCCACTACTTTTGCTGTTTGCTTCTTTTCTAACAGCCTTCATTATGGAAGtGTGATAGGAACAACTATACTTGGAATGGGGTATTATACAGTAATGTATGGTGGACAAATCAAAGGAAATGAACAAGAGACAAGCTGTGACGATAGCTCAGATTCTTTGGGCAAGAAGATACCTCTTTTGCAAGAAGAGATGGAAGTGTGA 432 0.4097 MKVLSYSSLLGTILSAIVSWVMERDINAWKLKRNKDLILIVLTALVGGVIRPNIQVWFTRMKGPLYVSLFKPFGIAFATTFAVCFFSNSLHYGSVIGTTILGMGYYTVMYGGQIKGNEQETSCDDSSDSLGKKIPLLQEEMEV 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2882 143 Pfam EamA-like transporter family 3 109 IPR000620 GO:0016020|GO:0016021
Ssu1g2882 143 PANTHER WAT1-RELATED PROTEIN 1 140 IPR030184 GO:0016021|GO:0022857
Ssu1g2882 143 PANTHER WAT1-RELATED PROTEIN 1 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2882 Ssu-Chr1 76064904 76065602 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2882 1 143 Nodulin-like Gene Family AT1G70260 48.701 3.77e-40 136
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2882 - - var:108330423 253.832