Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2880 ATGGGAAAGAAGGGCCCACTCTATGTTGCAATGTTTAAGCCACTTGGAATAGTCTTTGCGGTCATCATGGGTATTCCGTTTCTTGGGGACTCTCTTTATCTTGGAAGTGTGATTGGAGCAATCATAGTCGTTATTGGTTTTTATGCTGTTATTTGGGGGAAAAGCCAAGAGAAAGTGGAGGAAGAGTGTAAAGTTTATAGCTCGGCATCATACTCGCCCTTGTTCACTGCTATAGATCTATCTAAACTTATCCCACTTTCTGGTTTCAGAATGGAGCAGTTAGATTGGAGAAAATTTAGCAGCCTAGCTAAATCGTTGGGAACAATAGTATCAATTGCTGGTGCATTTATTGTGACTTTGTACAAGGGCCCTCCACTTTTGATGGGAGTATCATCTGCAAACTCATCTCAGCAGCCACTTTTCTCAGAAGATTCTAATTGGATACTTGGAGGATTATTTCTTGCGGCTGATTGTGTAATGGCTTcagcatatattattttacagGCTTCTATTCTTAAGAAATATCCAGCAGAGTTGATTGTTGTattcttttattgtttctttGTGGCCATTCAATCTGCTGTGACCTGTTTGGTTGTGGAAAGAGACATCAGTGCTTGGAGCTTGAAACCTAAGTTAAGTCTGATCGGTGCTACTGTGATTGTTGTTGGGTTTTATTCTGTATTATGGGGGAAAACCAAAGATATTGAAGCTGTTGGGGTGAGAAGCTTGGAATCAAAGGGCCAACAGACCCCGCTTTTGGAGGAAAACAGCCATGAAGACATACAAGGGCATTAG 798 0.3997 MGKKGPLYVAMFKPLGIVFAVIMGIPFLGDSLYLGSVIGAIIVVIGFYAVIWGKSQEKVEEECKVYSSASYSPLFTAIDLSKLIPLSGFRMEQLDWRKFSSLAKSLGTIVSIAGAFIVTLYKGPPLLMGVSSANSSQQPLFSEDSNWILGGLFLAADCVMASAYIILQASILKKYPAELIVVFFYCFFVAIQSAVTCLVVERDISAWSLKPKLSLIGATVIVVGFYSVLWGKTKDIEAVGVRSLESKGQQTPLLEENSHEDIQGH 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2880 265 PANTHER WAT1-RELATED PROTEIN 2 62 IPR030184 GO:0016021|GO:0022857
Ssu1g2880 265 PANTHER WAT1-RELATED PROTEIN 214 238 IPR030184 GO:0016021|GO:0022857
Ssu1g2880 265 PANTHER WAT1-RELATED PROTEIN 89 216 IPR030184 GO:0016021|GO:0022857
Ssu1g2880 265 SUPERFAMILY Multidrug resistance efflux transporter EmrE 6 55 - -
Ssu1g2880 265 PANTHER WAT1-RELATED PROTEIN 2 62 - -
Ssu1g2880 265 PANTHER WAT1-RELATED PROTEIN 89 216 - -
Ssu1g2880 265 PANTHER WAT1-RELATED PROTEIN 214 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2880 Ssu-Chr1 76019918 76059897 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2880 4 87 Nodulin-like Gene Family AT5G40240 50.588 1.07e-17 79.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2880 - - vun:114164332 246.899