Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2879 ATGAAGCAATTGGGCGTGGTTGCAGTCATGTTGACAATAGAATTGTTGGACGTGGTCGTCTACACTGTAAGCAAAGCAGCTATGAAGAAGGGCATGAATGACTTTGTGCTTGTCATGTACTCCAATGCCTTCTCAGCTTGCTTCCTACTTCCCATAACCTTAATCTTCTATAGGAAAAGAGCTCTTCCCTCACTCACATGTTGCATAGTTGCCCAATTATTTCTTAATGGCTTGTTAAGTTGCAGTGTTCAGACGCTAAGGTTTCTTGGAATAGGTTACAGCTCTCCTACTTTGGCCTCAGCAATGTCTGATTTAATCCCCGCTTTTACCTTCATGCTTGCCATCGTCTGCAGTGTGATTGGAGCAACCATAGTGATCATTGGTTTTTATGCTGTTATTTGGGGGAAAGGCCAAGAGAAAGCGGAGAAAGAGTATGAAGTCTATACCTCGGCATCATACTCACCCGTGGTCCCTCTTTTGCAGAACAAGAAAATGGAGGAATAG 504 0.4365 MKQLGVVAVMLTIELLDVVVYTVSKAAMKKGMNDFVLVMYSNAFSACFLLPITLIFYRKRALPSLTCCIVAQLFLNGLLSCSVQTLRFLGIGYSSPTLASAMSDLIPAFTFMLAIVCSVIGATIVIIGFYAVIWGKGQEKAEKEYEVYTSASYSPVVPLLQNKKMEE 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2879 167 SUPERFAMILY Multidrug resistance efflux transporter EmrE 42 137 - -
Ssu1g2879 167 PANTHER WAT1-RELATED PROTEIN 117 152 IPR030184 GO:0016021|GO:0022857
Ssu1g2879 167 PANTHER WAT1-RELATED PROTEIN 6 117 IPR030184 GO:0016021|GO:0022857
Ssu1g2879 167 PANTHER WAT1-RELATED PROTEIN 117 152 - -
Ssu1g2879 167 PANTHER WAT1-RELATED PROTEIN 6 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2879 Ssu-Chr1 76018093 76023152 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2879 8 158 Nodulin-like Gene Family AT5G40240 37.576 3.09e-21 87.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2879 - - gmx:100781718 187.193