Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2878 ATGGAGCTAATTGCTATTGGATGTTCAGCAATTTTCGTCTTATCCTTTCGAGGTGTTATCCATACATGGGCCATGGGGAAGAGGGGCCCTGTCTATGTTGCAATGTTTAAGCCACTTGAAATAGTCTTTGCAGTCATCTTGGGGATTACTTTTCTTGGGGACTCTCTCTATATTGGAAGTGTGATCGGAGCTGCCGTAGTAGTTATTGGATTTTATGCTGTTATTTGGGGGAAGACTCAAGAGAAGGTGGAGGAAGACTGTACAGTCTACAGCTCTGAATCTTCCGATAATGAGGTCCCTCGTTTACAGAACAAGAGAATGGGGGAATAA 330 0.4364 MELIAIGCSAIFVLSFRGVIHTWAMGKRGPVYVAMFKPLEIVFAVILGITFLGDSLYIGSVIGAAVVVIGFYAVIWGKTQEKVEEDCTVYSSESSDNEVPRLQNKRMGE 109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2878 109 PANTHER WAT1-RELATED PROTEIN 2 97 - -
Ssu1g2878 109 PANTHER WAT1-RELATED PROTEIN 2 97 IPR030184 GO:0016021|GO:0022857
Ssu1g2878 109 SUPERFAMILY Multidrug resistance efflux transporter EmrE 8 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2878 Ssu-Chr1 75998407 75999124 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2878 1 99 Nodulin-like Gene Family AT3G28050 48.515 1.29e-27 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2878 - - gmx:100500595 187.963