Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2877 ATGAAGGACCTGGGCGTGATTGCAGTGATGTTGACGGCACAGTTGTTGGAGGTGATCGTCAACACTGTAAGCAAATCAGCCATGAAGAATGGCATGAATAACTTTGTATTCGTAATGTACTCCAATGCCTTCGCAGCCTGCTTCCTTTTTCTCCTAACCTTAATCTTTTATAGGAAAAGAACACTTCCGCCACTCTCCTATAACATCATTGGCCTATTATTTGTCGTGGGCTTGCTCAGTTGCAGTAATCAGTTGCTCAAGTTTTTTGGCATACGTTACAGCTCTCCTACTTTGGCCTCAGCTCTGTCTGATTTGATCCCGGCCTTTACCTTCATACTTGCCATCATCTTCAGGATGGAAAAATTGGATTGGAAAGCTAACAGCACTTGGGCAAAGTCAATTGGCACATTGGTATCAATCTCTGGGGCCTTGATAATGTCTCTGTACAAAGGCCAGGCAATCATAAATAATCATCCCCCTTTTAAATTGTTCCCTGAAAAACTTGTCTCATCTATGCAATTTGACTGGGTATTTGGGGCAGCGTTGCTTGCGGGTCATAGCTGTTTTCTCTCAATAAACTTTATACTTGTGACACGGATAGTCAGAGAATACCCTGCAGAGCTGGTGGTGGTACTTATTCGCATTACATTAACCTCTATACTATCTGTTCCTGCTGCGCTGATTTCAGAAAAGGATCTAAAAGCTTTGAGACTGGGATTTAATATGGAGCTAATAACTATTGGATGTTCAGCAATTTTCGGCGTATCCTTTGGAGGTGTTATCTATACCTGGGCCATGGGGAAGAAGGGCCCTGTCTATGTTGCAATGTTTAATCCACTTGAAATAGTCTTCGCAGTCATCTTGGGGATTACATTTCTTGGGGACTCTGTCTATATTGGAAGTGCGATCGGAGCAGCCATAGTACTTATCGGTTTTTATTCTGTCATTTGGGGGAAAACTAAAGAGAAGGTGGAGGAAGACCGCACAGTGTACAGCTCTGAATCATACTCTACAGAGGCCCCTCTTTTGCAGAACAAGAGAATGGGGGAATAA 1053 0.4311 MKDLGVIAVMLTAQLLEVIVNTVSKSAMKNGMNNFVFVMYSNAFAACFLFLLTLIFYRKRTLPPLSYNIIGLLFVVGLLSCSNQLLKFFGIRYSSPTLASALSDLIPAFTFILAIIFRMEKLDWKANSTWAKSIGTLVSISGALIMSLYKGQAIINNHPPFKLFPEKLVSSMQFDWVFGAALLAGHSCFLSINFILVTRIVREYPAELVVVLIRITLTSILSVPAALISEKDLKALRLGFNMELITIGCSAIFGVSFGGVIYTWAMGKKGPVYVAMFNPLEIVFAVILGITFLGDSVYIGSAIGAAIVLIGFYSVIWGKTKEKVEEDRTVYSSESYSTEAPLLQNKRMGE 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2877 350 PANTHER WAT1-RELATED PROTEIN 8 330 - -
Ssu1g2877 350 SUPERFAMILY Multidrug resistance efflux transporter EmrE 43 150 - -
Ssu1g2877 350 Pfam EamA-like transporter family 7 147 IPR000620 GO:0016020|GO:0016021
Ssu1g2877 350 Pfam EamA-like transporter family 178 316 IPR000620 GO:0016020|GO:0016021
Ssu1g2877 350 PANTHER WAT1-RELATED PROTEIN 8 330 IPR030184 GO:0016021|GO:0022857
Ssu1g2877 350 SUPERFAMILY Multidrug resistance efflux transporter EmrE 240 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2877 Ssu-Chr1 75985897 75988101 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2877 7 350 Nodulin-like Gene Family AT3G28050 40.449 4.65e-81 249
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2877 - - gmx:100500595 558.525