Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2872 ATGTCGAGCAATGCTTTAACTCTTTTTATCTTGTTTCTTAATATCTCCTTGTGTCCATCCATCTCTGCTCTGAACCAGGAAGGTCTCTCTCTACTTTCATGGCTTTCAACCTTCAACTCTTCCAACTCTGCTACTGCCTTCTCTTCATGGGATCCAACCCACAAAAATCCTTGCACATGGGATTACATAACATGTTCCAAAGAAGGGCTTGTGGCAGAGATCATAATAACATCCATTGATCTACGTAGCAGCTTCCCCACACAGCTCCTTTCTTTTGGTCACCTTGCCACTCTCGTCATCTCAAATGGCAATCTCACTGGTGAGATTCCAAGTTCAGTGAGAAACTTGTCCTCTTTGGTCACTTTGGACCTTAGCTTCAATGCTTTATCAGGAAGCATTCCAGAAGAAATAGGAATGCTATCTAAGCTGAAGTTGTTACTATTGAATTCAAATTCCTTCCAGGGTGGAATTCCAACCACAATTGGAAACTGTTCAAAGCTTCAGCATCTGGCACTTTATGACAACCAGCTCTCTGGAATGATACCTGGAGAAATAGGCCAGTTGAGGGCTCTTGAAACACTAAGAGCAGGAGGAAATCCTGGTATTCATGGTGAAATTCCAATGCAGATATCAGACTGCAAGGCTCTTGTTTTGCTGGGACTTGCAGTTACTGGTGTTTCTGGGGAGATTCCACCAAGTATAGGAGAGCTTCAGAATCTCAAGACACTTTCAGTCTACACAGCACATCTCAGAGGTCATATCCCAGCAGAGATTCAAAACTGCTCAGCTTTGGAGGATTTGTTTCTGTATGAGAACCAGCTTTCTGGAAGTATTCCTTATGAATTGGGCTCCATGCAAAGCCTCAGGAGGGTGTTGCTGTGGCAGAACAATTTAACTGGCACCATTCCAGAAAGTCTTGGGAACTGTACAAATCTCAAGGTTATAGATTTCTCTTTGAACTCTCTGTGGGGTCAGATACCTGTGACCCTCAGTAGTCTACTCTTATTGGAGGAGTTTCTTTTGTCTGATAATAATATTTGTGGAGAAATACCTTCCTATATTGGCAACTTTTCCAGGCTGAAGCAACTTGAATTGGATAACAACAAATTCTCTGGGGAGATACCACCTGTTATGGGGCAACTGAAGGAACTTACCCTCTTCTATGCCTGGCAGAATCAACTAAATGGAAGTATACCGACAGAACTATCCAACTGTGAGAAACTCGAAGCACTTGATCTTTCACACAATTCACTCACTGGTTCCATTCCAAATTCACTCTTTCATCTTGGGAATTTGACTCAGTTGTTGCTGATATCAAACAGACTTTCAGGTCACATTCCAGCAGATATTGGCAGTTGCACCAGCTTGTTCAGGTTACGGCTGGGATCAAACAACTTTACTGGTCAAATTCCACCAGAAATAGGTCTTTTGAGCAGTTTGAGCTTTCTTGAGTTGTCAAATAATCTACTCAGTGGAGATATTCCCTCTGAGATAGGTAACTGTGCTCAGCTAGAAATGCTTGACTTGCACAGCAATGCGCTGCAAGGAACTGTTCCTTCCTCATTAAAGTTCTTAGTTGGTCTTAATGTGTTAGATCTTTCTGCAAACAGAATAACTGGAAGCATTCCTGAGAATTTGGGCAAGCTTACATCTCTAAATAAGTTGATTCTAAGTGGAAACCTTATCTCTGGTGTGATCCCTCGGACACTGGGGCTTTGTAAGGATTTGCAGTTGCTGGATATAAGTAACAATAGGATCACTGGTCCTATTCCTGATGAGATTGGTCATTTGCAAGGATTAGATATCCTCTTGAACTTGAGTTGGAATGCTCTTACTGGCCCCATTCCAGAGACCTTCTCAAATCTCTCAAAACTGTCCATCTTGGACCTCTCTCACAACAAGCTCACAGATACACTCACAGTACTGGGTAGTCTTGACAACCTTGTTTCTCTAAATGTCTCCTACAATAGCTTTTCTGGTTCTCTTCCTGATACAAAGTTCTTCCGGGATCTACCTGCTGCTGCATTTGCTGGTAACCCTGACCTTTGCATTAGCAAGTGTCAAGCAAGTGGAAGTGGCCAAGGCATCAAGTCagttagaaatattattatttacactttCCTTGgggttattttaatttctatttttgtcaCTTGTGGAGTAATTTTAACTCTCAGGATTCATGGGGGCAGTTTAGGGAGGAACATTGATGAAGGTGGTGAAATGGAATGGGCTTTCACTCCATTCCAAAAACTCAACTTCTCCATCAATGACATTGTGACAAAGTTGTCAGAATCAAACATTGTGGGAAAGGGTTGTTCTGGAATTGTTTATCGTGTAGAGACTCCAATGAAACAGATTATTGCAGTGAAGAAGCTATGGCCAATAAAGAAAGAAGAGCCACCAGAGAGAGATCTGTTTACTGCAGAAGTTCAGACCCTTGGATCAATAAGACATAAGAATATAGTGAGACTTTTAGGATGCTGTGACAATGGAAGAACTAGATTGCTCTTGTTTGATTATATATGTAACGGGAGTTTGTTTGGATTGCTCCATGAAAAGAGATTGTTCTTGGATTGGGATGCAAGGTATAAGATCATACTGGGAGCAGCTCATGGTCTAGAATACCTTCATCATGATTGTATCCCTCCAATTGTCCACAGGGACGTTAAGGCTAACAACATCTTGGTAGGTCCACAATTTGAAGCTTTTCTTGCAGATTTTGGCCTTGCAAAACTCGTGAGTTCCTCAGAGTGTTCAGGAGCCTCTCATACGGTTGCAGGTTCTTATGGATACATAGCTCCTGAATATGGATACAGTTTAAGGATCACAGAAAAGAGTGATGTGTACAGTTATGGTGTTGTGCTCCTTGAGGTCTTAACGGGGATGGAACCAACTGATAACAGGATTCCAGAGGGTGCCCACATTGTCACATGGGTTAGCAATGAAATccgagagaagaaaagagaatttaCATCTATCCTCGACCAGCAACTAGTATTGCAGAGTGGAACAAAAACCTCTGAGATGCTTCAGGTGCTAGGGGTGGCTCTCCTTTGTGTGAATCCATCCCCAGAAGACCGACCTACTATGAAAGATGTAACAGCAATGCTCAAGGAGATCAGGCATGAAAATGATGATTTCGAGAAACCAAATTTTCTCCATAAAGGCATGGTTACCAATCCAAAAGCAGCAGTTCACTGTTCAAGTTTCTCAAGATCATGTGAACCTTTAATAATAGAATCAACATCTTCTTCTTCATAG 3264 0.4127 MSSNALTLFILFLNISLCPSISALNQEGLSLLSWLSTFNSSNSATAFSSWDPTHKNPCTWDYITCSKEGLVAEIIITSIDLRSSFPTQLLSFGHLATLVISNGNLTGEIPSSVRNLSSLVTLDLSFNALSGSIPEEIGMLSKLKLLLLNSNSFQGGIPTTIGNCSKLQHLALYDNQLSGMIPGEIGQLRALETLRAGGNPGIHGEIPMQISDCKALVLLGLAVTGVSGEIPPSIGELQNLKTLSVYTAHLRGHIPAEIQNCSALEDLFLYENQLSGSIPYELGSMQSLRRVLLWQNNLTGTIPESLGNCTNLKVIDFSLNSLWGQIPVTLSSLLLLEEFLLSDNNICGEIPSYIGNFSRLKQLELDNNKFSGEIPPVMGQLKELTLFYAWQNQLNGSIPTELSNCEKLEALDLSHNSLTGSIPNSLFHLGNLTQLLLISNRLSGHIPADIGSCTSLFRLRLGSNNFTGQIPPEIGLLSSLSFLELSNNLLSGDIPSEIGNCAQLEMLDLHSNALQGTVPSSLKFLVGLNVLDLSANRITGSIPENLGKLTSLNKLILSGNLISGVIPRTLGLCKDLQLLDISNNRITGPIPDEIGHLQGLDILLNLSWNALTGPIPETFSNLSKLSILDLSHNKLTDTLTVLGSLDNLVSLNVSYNSFSGSLPDTKFFRDLPAAAFAGNPDLCISKCQASGSGQGIKSVRNIIIYTFLGVILISIFVTCGVILTLRIHGGSLGRNIDEGGEMEWAFTPFQKLNFSINDIVTKLSESNIVGKGCSGIVYRVETPMKQIIAVKKLWPIKKEEPPERDLFTAEVQTLGSIRHKNIVRLLGCCDNGRTRLLLFDYICNGSLFGLLHEKRLFLDWDARYKIILGAAHGLEYLHHDCIPPIVHRDVKANNILVGPQFEAFLADFGLAKLVSSSECSGASHTVAGSYGYIAPEYGYSLRITEKSDVYSYGVVLLEVLTGMEPTDNRIPEGAHIVTWVSNEIREKKREFTSILDQQLVLQSGTKTSEMLQVLGVALLCVNPSPEDRPTMKDVTAMLKEIRHENDDFEKPNFLHKGMVTNPKAAVHCSSFSRSCEPLIIESTSSSS 1087
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2872 1087 Pfam Leucine Rich Repeat 407 429 IPR001611 GO:0005515
Ssu1g2872 1087 Gene3D Transferase(Phosphotransferase) domain 1 842 1058 - -
Ssu1g2872 1087 PRINTS Leucine-rich repeat signature 408 421 - -
Ssu1g2872 1087 PRINTS Leucine-rich repeat signature 622 635 - -
Ssu1g2872 1087 ProSiteProfiles Leucine-rich repeat profile. 407 429 IPR001611 GO:0005515
Ssu1g2872 1087 Gene3D Ribonuclease Inhibitor 202 356 IPR032675 -
Ssu1g2872 1087 ProSiteProfiles Protein kinase domain profile. 763 1046 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g2872 1087 SMART serkin_6 763 1038 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g2872 1087 ProSitePatterns Protein kinases ATP-binding region signature. 769 797 IPR017441 GO:0005524
Ssu1g2872 1087 SUPERFAMILY Protein kinase-like (PK-like) 750 1047 IPR011009 -
Ssu1g2872 1087 Gene3D Ribonuclease Inhibitor 428 694 IPR032675 -
Ssu1g2872 1087 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 3 1059 - -
Ssu1g2872 1087 Gene3D Phosphorylase Kinase; domain 1 737 841 - -
Ssu1g2872 1087 SMART LRR_typ_2 285 309 IPR003591 -
Ssu1g2872 1087 SMART LRR_typ_2 477 501 IPR003591 -
Ssu1g2872 1087 SMART LRR_typ_2 357 381 IPR003591 -
Ssu1g2872 1087 SMART LRR_typ_2 645 678 IPR003591 -
Ssu1g2872 1087 SMART LRR_typ_2 622 644 IPR003591 -
Ssu1g2872 1087 SMART LRR_typ_2 549 572 IPR003591 -
Ssu1g2872 1087 SMART LRR_typ_2 116 140 IPR003591 -
Ssu1g2872 1087 SMART LRR_typ_2 429 453 IPR003591 -
Ssu1g2872 1087 SMART LRR_typ_2 525 548 IPR003591 -
Ssu1g2872 1087 Gene3D Ribonuclease Inhibitor 23 201 IPR032675 -
Ssu1g2872 1087 Gene3D Ribonuclease Inhibitor 357 427 IPR032675 -
Ssu1g2872 1087 SUPERFAMILY RNI-like 81 417 - -
Ssu1g2872 1087 ProSitePatterns Serine/Threonine protein kinases active-site signature. 885 897 IPR008271 GO:0004672|GO:0006468
Ssu1g2872 1087 PANTHER LRR RECEPTOR-LIKE KINASE 3 1059 - -
Ssu1g2872 1087 Pfam Leucine rich repeat 142 199 IPR001611 GO:0005515
Ssu1g2872 1087 Pfam Leucine rich repeat 503 562 IPR001611 GO:0005515
Ssu1g2872 1087 Pfam Leucine rich repeat 604 657 IPR001611 GO:0005515
Ssu1g2872 1087 SUPERFAMILY RNI-like 293 661 - -
Ssu1g2872 1087 Pfam Leucine rich repeat N-terminal domain 25 66 IPR013210 -
Ssu1g2872 1087 Pfam Protein kinase domain 765 1035 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g2872 1087 ProSiteProfiles Leucine-rich repeat profile. 624 646 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2872 Ssu-Chr1 75885131 75888781 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2872 23 1076 Receptor kinase-like Gene Family AT5G56040 47.184 0.0 933
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Ssu1g2872 Pkinase 4.1e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2872 - - gmx:100780101 1950.64
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2872 1 75885131 75888781 Ssu1g2872 1 75885131 75888781 ECH