Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2870 ATGAGGATTATGATAAAGGGCGGTGTTTGGAAGAACACCGAAGATGAAATCCTGAAAGCGGCTGTTATGAAATATGGCAAAAACCAGTGGGCTCGAATCTCTTCACTCCTCGTTCGCAAATCCGCCAAGCAATGCAAAGCTCGCTGGTATGAGTGGCTCGATCCTTCCATCAAAAAGacTGAGTGGACGAGAGAAGAGGATGAGAAACTACTTCATCTTGCTAAGCTTATGCCCACACAGTGGAGAACAATTGCTCCAATTGTGGGCCGTACCCCTTCCCAGTGTCTTGAGCGGTATGAGAAGCTCCTTGATGCAGCTTGTGTAAAGGATGAGAACTATGAACCCGGTGATGATCCTCGGAAACTGCGTCCTGGGGAGATTGATCCAAACCCTGAGTCGAAACCTGCACGCCCGGATCCTGTTGATATGGATGAAGATGAAAAGGAGATGCTTTCTGAAGCACGAGCCCGGTTAGCCAACACAAAGGGCAAGAAAGCAAAAAGGAAAGCTAGGGAGAAACAGCTTGAGGAAGCCAGGAGACTTGCTTCTTTacagaaaaagagagaattgaAGGCTGCCGGAATTGATATTAGGcggaagaggaaaaggaaaggaatagACTACAATGCAGAAATTCCATTTGAAAAAAGGCCTCCTCCGGGGTTTTTTGATGTTACGGATGAAGATAGACCAGTGGAACAGCCCAAGTTCCCTACTACAATTGAAGAACTTGAAGGAAAAAGGAGGGTTGATATCGAGGCACAGTTAAGGAAGCAGGacattgcaaaaaataaaattgcgcAAAGGCAAGATGCCCCATCTGCCATACTGCATGCCAACAAGCTGAATGACCCAGAAGCAGTAAGAAAGAGGTCAAAACTGATGCTTCCGCCACCCCAGATTTCTGATCAGGAATTGGATGAAATTGCAAAGTTGGGTTATGCCAGTGACCTTGCAGGGAGTCAGGAACTTGCTGAAGGTAGTGGTGCAACTCGTGCTCTTCTGGCTAATTATGCACAGACGCCTGGCCAAGGAATGACTCCTTTACGAACCCCTCAGAGAACACCAGCTGGTAAAGGAGATGCTATCATGATGGAAGCTGAAAATCTGGCCAGGTTGAGGGAGTCTCAAACACCATTGTTAGGAGGAGAGAACCCGGAGTTGCATCCTTCAGATTTTTCTGGGGTCACTCCTAAGAAAAAGGAGATTCAGACTCCAAATCCAATGCTGACTCCCTCTGCAACTCCTGGAGGTGCAGGACTCACTCCTAGAATGACACCAGGCAGAGATGGTTTTTCTTTTAGCATGACACCAAAGGGAACTCCTCTTAGGGATGAGCTACATATTAATGAGGACATGAATATACATGACAGCACTAAACTTGAGATGCAGAGACAAGCTGATATGAGAAGAAGTTTGCGCTCTGGTTTAGGAAGCCTTCCACAGCCCAAAAATGAGTACCAGATAGTGATGCAACCAGTTCCAGAAGACACTGAAGAGCCTGAGGCAGAAGAGGAGGCAAGGCAGCAGGCATTACTTAGAAAACGGTCAAAAGTTCTTCAACGGGAACTTCCTAGGCCTCCTGCTGCATCATTGGAGCTTATAAGAAATTCCTTGATGAGAGCTGACGGGGACAAGAGTTCCTTTGTTCCACCGACCTCTATTGAGCAAGCTGATGAGATGACTAGAAGGGAGCTTCTAACTTTACTGGAGCATGACAATGCTAAGTATCCGCTTGATGAGAAAGTGActaaggagaaaaagaaaggagccAAGCGTGCCATAAATGGGTCCGATGTCCCTGTGATAGAAGATTTTCCTGAAGATGAAATGAAAGATGCTGATAAGTTGATAAAGGAAGAGGCCCAGTATCTTTGTGCAGCAATGGGACATGAAAGTGAACCCCTTGATGAATTTATTGAAGCACACAGAACCTGTCTCAATGATCTTATGTACTTTCCTACTCGTAATGCCTATGGTCTCTCAAGTGTTGCTGGGAACATGGAAAAGCTAGCAGCTTTGCAGAATGAATTTGAGAATGTGAGAAACAAATTGGATGATGGTAAGGAGAAGATGGTACGGCTTGAGAAGAAGGTGATGGTTCTCACACAAGGCTATGAGatgaGAGTAAAAAAAAGCCTATGGCCGCAAATTGAGGCCACTTTCAAGCAGATGGACATAGCTGCAACAGAGTTAGAATGCTTTAAAGCTTTGCAAAAGCAGGAGCAATTAGCAGCATCACATAGGATAAACAATCTGTGGGCTGAAGTACAGAAGCAAAAGGAACTTGAGAAAACTTTGCAAACTAGGTATGGGCGTCAAATTGAAGAGCTGGAAAAGATACAAAATATCGTGGACCAATACAGATTACAAGCACAACAGCAAGAAGAAATGGAAGCAAACAACCATGCTCGTGAGTCAACTGAGACCAAGGCCAGCGAAACTGATGTACAGGGTACAGAGAATTGTGAAGCTGTACCTCACTCAGTAGAGCATGGACATGCTCTAGCAGCTGAGTCATCTCATGATGGAACTGCTGATCAGCAAGTAGATATTATGCAAGACCAAGCTACTTCTAGCCCCAGTAATGACATGGATTTGGATTCTGATAAAATGCAAATGACACACGACACTGATGTTAAATTGGCAAATGCTACACCTGCTGCAGAGAATGTCGATGAAGAAGTGGAAGGTACCAGTACTGACAGCTATACTGACAATGGGAAGACCATGCTAGGAATGGGTGATGCAGTGGAAATAAGTGGCCCCAATCATGATGTAGTTGTAGATGCTGTAAACTCACATGATAACAGCATGGAAGAAACCAATGTTGTTAGGGAGGAGACAAATTAG 2853 0.4367 MRIMIKGGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKTEWTREEDEKLLHLAKLMPTQWRTIAPIVGRTPSQCLERYEKLLDAACVKDENYEPGDDPRKLRPGEIDPNPESKPARPDPVDMDEDEKEMLSEARARLANTKGKKAKRKAREKQLEEARRLASLQKKRELKAAGIDIRRKRKRKGIDYNAEIPFEKRPPPGFFDVTDEDRPVEQPKFPTTIEELEGKRRVDIEAQLRKQDIAKNKIAQRQDAPSAILHANKLNDPEAVRKRSKLMLPPPQISDQELDEIAKLGYASDLAGSQELAEGSGATRALLANYAQTPGQGMTPLRTPQRTPAGKGDAIMMEAENLARLRESQTPLLGGENPELHPSDFSGVTPKKKEIQTPNPMLTPSATPGGAGLTPRMTPGRDGFSFSMTPKGTPLRDELHINEDMNIHDSTKLEMQRQADMRRSLRSGLGSLPQPKNEYQIVMQPVPEDTEEPEAEEEARQQALLRKRSKVLQRELPRPPAASLELIRNSLMRADGDKSSFVPPTSIEQADEMTRRELLTLLEHDNAKYPLDEKVTKEKKKGAKRAINGSDVPVIEDFPEDEMKDADKLIKEEAQYLCAAMGHESEPLDEFIEAHRTCLNDLMYFPTRNAYGLSSVAGNMEKLAALQNEFENVRNKLDDGKEKMVRLEKKVMVLTQGYEMRVKKSLWPQIEATFKQMDIAATELECFKALQKQEQLAASHRINNLWAEVQKQKELEKTLQTRYGRQIEELEKIQNIVDQYRLQAQQQEEMEANNHARESTETKASETDVQGTENCEAVPHSVEHGHALAAESSHDGTADQQVDIMQDQATSSPSNDMDLDSDKMQMTHDTDVKLANATPAAENVDEEVEGTSTDSYTDNGKTMLGMGDAVEISGPNHDVVVDAVNSHDNSMEETNVVREETN 950
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2870 950 CDD SANT_CDC5_II 55 106 - -
Ssu1g2870 950 MobiDBLite consensus disorder prediction 212 235 - -
Ssu1g2870 950 Pfam pre-mRNA splicing factor component 405 636 IPR021786 -
Ssu1g2870 950 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 107 IPR017930 -
Ssu1g2870 950 MobiDBLite consensus disorder prediction 379 420 - -
Ssu1g2870 950 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 2 57 IPR017930 -
Ssu1g2870 950 MobiDBLite consensus disorder prediction 398 412 - -
Ssu1g2870 950 Coils Coil 167 187 - -
Ssu1g2870 950 Gene3D - 5 59 - -
Ssu1g2870 950 SUPERFAMILY Homeodomain-like 33 106 IPR009057 -
Ssu1g2870 950 SMART sant 58 105 IPR001005 -
Ssu1g2870 950 SMART sant 6 55 IPR001005 -
Ssu1g2870 950 MobiDBLite consensus disorder prediction 113 150 - -
Ssu1g2870 950 MobiDBLite consensus disorder prediction 886 907 - -
Ssu1g2870 950 ProSiteProfiles Myb-like domain profile. 2 53 IPR001005 -
Ssu1g2870 950 Coils Coil 664 698 - -
Ssu1g2870 950 MobiDBLite consensus disorder prediction 794 818 - -
Ssu1g2870 950 Coils Coil 778 798 - -
Ssu1g2870 950 MobiDBLite consensus disorder prediction 221 235 - -
Ssu1g2870 950 CDD SANT 10 53 IPR001005 -
Ssu1g2870 950 Gene3D - 60 114 - -
Ssu1g2870 950 Pfam Myb-like DNA-binding domain 10 70 - -
Ssu1g2870 950 PANTHER CELL DIVISION CYCLE 5-LIKE PROTEIN 1 780 - -
Ssu1g2870 950 ProSiteProfiles Myb-like domain profile. 54 103 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2870 Ssu-Chr1 75856367 75863127 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2870 1 817 MYB-Related Transcription Factor Family AT1G09770 74.255 0.0 1217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ssu1g2870 Myb_Cef 1.2e-47 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2870 K12860 - gmx:100790369 1641.32