Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2864 ATGGACAAGAAGTTGGTCCTGTTGTTCATTTTATCAGCAGCCTTGGTGATGGAAGCAGTGTTTGATAGTGTTGGAGCTGAACCAGTGGAAGATAAACAAGCTTTGCTTGATTTCCTTGACAACATGGATCACTCTCCTCATGTCAACTGGGATGAGAACACTTCTGTTTGCCAAACCTGGAGAGGAGTGACTTGCAACTCTGACAAGTCCCGAGTCATAGCCCTTCGGTTGCCAGGAGCTGGGTTGAGTGGTCCAATCCCACCCAACACTCTCAATCGCCTCTCAGAACTTGAGATTGTGAGTCTTAGATTAAATGGTATAACAGGCCCTTTCCCTGATGATTTCTCTGAGCTGAAAAATTTGACCAGCCTCTATCTCCAGTCTAACAAGTTTTCTGGGCCATTGCCATTGGATTTTTCAGTTTGGAATAATCTTAGTGTTGTCAATTTGTCCAACAATTCTTTCAATGGGAGCATccctttttcaatttcaaatctgaCTCATCTCACCTCATTAGTCCTTGCCAACAACTTCCTTTCGGGTGAGATTCCTGATCTCAATATTCCTAGCCTGCAGGAGCTGAATTTAGCCAACAATAACCTTAGTGGGGTTGTGCCTAAATCCCTTCTTAGATTTCCTAGTTCGGCCTTTGCTGGTAACAATCTTACATCAGCAGATGCACTTTCTCCAGCTTTTCCTCTGCAACCACCACCGGTTGCTCATCCAGCAAAGAAATCCAAAGGACTCAGTGAACCTGCATTGTTGGGTATCATCATTGGTGCTTGTGTGCTGGGGTTTGTGGTGATTGCAGGTTTCATGATTGTGTGCTGCTATCAGAATGCAGATGTGGATGTGCAACCAGTGAAATCCCAGAAAAAACAAGTCTCTGTGAAGACAGAATCTGCTGGAAGTCAagacaaaaacaacaaaattatcttCTTTGAGGGTTGCAATCTTGCATTTGATCTAGAGGACCTGTTGAGAGCCTCTGCTGAGATTCTTGGGAAGGGTACCTTTGGCATGACATACAAGGCTGCTCTAGAGGATGCAACCACTGTGGTGGTCAAGAGGTTGAAGGAGGTCACCGTTGGAAAACGAGATTTTGAACAGCAGATGGAGGTGGTGGGGAAAATTAAGCACGAAAATGTGGATGTAGTGAGGGCATATTACTATTCAAAGGAGGAGAAACTCATAGTATATGATTACTATCAACAAGGCAGTGTTTCTGCAATGTTACATGACAAAGGAGGGGAAGGCAGAAGTTCTTTAGACTGGGATAGCCGTTTGAGAATTGCAATTGGTGCAGCGAGAGGCATTGCTCACATCCATGCTCAATATGGAGGGAAGCTCGTTCATGGAAACATAAAAGCCTCAAACATCTTCCTCAACTCACAAGGATATGGATGCATATCTGATATTGGTTTGGCAATATTGATGAGTCCAATACCCGCCCCAGCAATAAGAGCAACGGGATACCGTGCGCCAGAAGTAACAGACACCCGCAGAGCAACCCACGCATCTGATGTCTACAGTTTTGGGGTCCTGCTACTTGAACTTCTGACAGGGAAATCCCCCATAAACAGCACAGAAGGTGAGCAGGTTGTCCACTTGGTTAGATGGGTGAATTCTGTGGTTAGAGAGGAGTGGACTGCAGAAGTGTTTGATGTAGAGCTGTTGAGGTATCCAAACATAGAGGAAGAAATGGTGGGGATGCTACAAATAGGGATGGCTTGTGCTGAAAGATTACCGGATCAGAGACCAAAAATGCTTGATGTGGTGAGAATGATGGAGGAGATTCGCCATGTAAGTACGCCGAATCTACCATCCACCGAGTCTAGATCAGAAGTCTCTACACCGACCCCTCGTGCAGTTGACACACCTTCTACCTCTGTTCAACAATGa 1902 0.4448 MDKKLVLLFILSAALVMEAVFDSVGAEPVEDKQALLDFLDNMDHSPHVNWDENTSVCQTWRGVTCNSDKSRVIALRLPGAGLSGPIPPNTLNRLSELEIVSLRLNGITGPFPDDFSELKNLTSLYLQSNKFSGPLPLDFSVWNNLSVVNLSNNSFNGSIPFSISNLTHLTSLVLANNFLSGEIPDLNIPSLQELNLANNNLSGVVPKSLLRFPSSAFAGNNLTSADALSPAFPLQPPPVAHPAKKSKGLSEPALLGIIIGACVLGFVVIAGFMIVCCYQNADVDVQPVKSQKKQVSVKTESAGSQDKNNKIIFFEGCNLAFDLEDLLRASAEILGKGTFGMTYKAALEDATTVVVKRLKEVTVGKRDFEQQMEVVGKIKHENVDVVRAYYYSKEEKLIVYDYYQQGSVSAMLHDKGGEGRSSLDWDSRLRIAIGAARGIAHIHAQYGGKLVHGNIKASNIFLNSQGYGCISDIGLAILMSPIPAPAIRATGYRAPEVTDTRRATHASDVYSFGVLLLELLTGKSPINSTEGEQVVHLVRWVNSVVREEWTAEVFDVELLRYPNIEEEMVGMLQIGMACAERLPDQRPKMLDVVRMMEEIRHVSTPNLPSTESRSEVSTPTPRAVDTPSTSVQQ 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2864 633 SUPERFAMILY L domain-like 46 212 - -
Ssu1g2864 633 Gene3D Transferase(Phosphotransferase) domain 1 404 617 - -
Ssu1g2864 633 ProSiteProfiles Protein kinase domain profile. 328 599 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g2864 633 MobiDBLite consensus disorder prediction 603 633 - -
Ssu1g2864 633 Gene3D Ribonuclease Inhibitor 29 232 IPR032675 -
Ssu1g2864 633 SUPERFAMILY Protein kinase-like (PK-like) 332 597 IPR011009 -
Ssu1g2864 633 ProSitePatterns Protein kinases ATP-binding region signature. 334 365 IPR017441 GO:0005524
Ssu1g2864 633 MobiDBLite consensus disorder prediction 601 633 - -
Ssu1g2864 633 ProSiteProfiles Leucine-rich repeat profile. 190 211 IPR001611 GO:0005515
Ssu1g2864 633 Gene3D Phosphorylase Kinase; domain 1 292 402 - -
Ssu1g2864 633 Pfam Protein tyrosine and serine/threonine kinase 332 593 IPR001245 GO:0004672|GO:0006468
Ssu1g2864 633 PANTHER OS05G0588300 PROTEIN 18 625 - -
Ssu1g2864 633 PANTHER LRR RECEPTOR-LIKE KINASE 18 625 - -
Ssu1g2864 633 Pfam Leucine rich repeat N-terminal domain 30 66 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2864 Ssu-Chr1 75760028 75762213 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2864 26 620 Receptor kinase-like Gene Family AT4G23740 56.840 0.0 680
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Ssu1g2864 PK_Tyr_Ser-Thr 3.6e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2864 - - gmx:100813065 1077.39