Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2861 ATGGAAGAGAGTATCCTATGCAAACACACAGTGCATCACAGCGTTACCAAGAAGCTCGCCAGGAAGTCCCAAACCAATTCAACAGAGCGCAGAATAGTGCGGATTTCATACACCGATCCGGACGCCACCGATTCTTCCAGCGACGACGAATCAGCCCCCTTCGTCCGCCAAAGAAGGAAGCGCTACGTCAACCAGATTGAAATAGAAACCGCCGCGGCGCCGCCCAACGCGCGGAAGAGGCCCGCCGGGGAGACTCCCCGGCGGCCAGTGAAGCTTCACGCCGGGAAGAAGTTCCGCGGCGTTCGGCAGCGACCGTGGGGGAAATGGGCGGCGGAGATTCGAGATCCGGCGAGAAGGGTGCGGCTCTGGCTGGGAACCTACGACACGGCCGAAGAAGCCGCCATGGTCTACGACAATGCCGCCATCAGGCTTCGCGGCCCCGACGCCTTGACGAACTTCGTAACGCCGCCGCGGAGGGAGCCTCCCAAGGTTGCCGTCACCGAGGAAGCCTCCGGGTCCGGCTACGACTCCGGCGACGATCCCTGCCGGCACAGCCTCTCCTCTCCCACTTCGGTGCTCCACTTCCGGAGCAACTCGAGCGAAGAAAATTCCGAGAAGACGGGCGAGACGGAGACGAGCTTGTTCGACGAGACGGGGGAGTTTTTCTCTCCGGACATGCCTGCCTGGGACGACGTGTTCAATTTCGAAACCCCCGAGAACCCTCTTCTGTTTCAAGAGGAGCACCTGCTGCTGCAGCATCAGTCCCAGATGTTGGGCGAAACGGTGCCGTTTTCCTCGGACGAACATCTCAGTGACAGCAGTATCGTGCTCGCGGACTCGCTCATAGATTTCGACAAGGCATGCTCTCCAACGCCATCTGCCTTGTGCCAAGTGGACGATTACTTCCAAGACATTTTGTTAGGCTCGGATCCTCTCGTGCTTCTCTGA 948 0.596 MEESILCKHTVHHSVTKKLARKSQTNSTERRIVRISYTDPDATDSSSDDESAPFVRQRRKRYVNQIEIETAAAPPNARKRPAGETPRRPVKLHAGKKFRGVRQRPWGKWAAEIRDPARRVRLWLGTYDTAEEAAMVYDNAAIRLRGPDALTNFVTPPRREPPKVAVTEEASGSGYDSGDDPCRHSLSSPTSVLHFRSNSSEENSEKTGETETSLFDETGEFFSPDMPAWDDVFNFETPENPLLFQEEHLLLQHQSQMLGETVPFSSDEHLSDSSIVLADSLIDFDKACSPTPSALCQVDDYFQDILLGSDPLVLL 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2861 315 MobiDBLite consensus disorder prediction 183 198 - -
Ssu1g2861 315 Pfam AP2 domain 97 146 IPR001471 GO:0003700|GO:0006355
Ssu1g2861 315 CDD AP2 96 153 IPR001471 GO:0003700|GO:0006355
Ssu1g2861 315 PRINTS Ethylene responsive element binding protein signature 120 136 IPR001471 GO:0003700|GO:0006355
Ssu1g2861 315 PRINTS Ethylene responsive element binding protein signature 98 109 IPR001471 GO:0003700|GO:0006355
Ssu1g2861 315 ProSiteProfiles AP2/ERF domain profile. 97 154 IPR001471 GO:0003700|GO:0006355
Ssu1g2861 315 MobiDBLite consensus disorder prediction 17 91 - -
Ssu1g2861 315 MobiDBLite consensus disorder prediction 153 212 - -
Ssu1g2861 315 Gene3D AP2/ERF domain 96 155 IPR036955 GO:0003700|GO:0006355
Ssu1g2861 315 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR CRF4-LIKE 19 229 - -
Ssu1g2861 315 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 19 229 - -
Ssu1g2861 315 SMART rav1_2 97 160 IPR001471 GO:0003700|GO:0006355
Ssu1g2861 315 SUPERFAMILY DNA-binding domain 97 154 IPR016177 GO:0003677
Ssu1g2861 315 MobiDBLite consensus disorder prediction 51 65 - -
Ssu1g2861 315 MobiDBLite consensus disorder prediction 29 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2861 Ssu-Chr1 75714121 75715068 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2861 7 202 AP2-EREBP Transcription Factor Family AT4G27950 51.152 7.02e-55 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Ssu1g2861 AP2 7.7e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2861 - - gmx:100807598 465.307