Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2857 ATGGACGACAGCTTATGCGATATTTTCGAAGACAAGGAGTTTGGGAGCGACCACTTTGGTGGGGACGATCTCTTCGCCATTTTGGAGAGCCTAGAATCGGACTTCACCGATTTCCCTCCCATCAACGAAGCTGTTGCTGTCTCGAAAGAGAACGAGGATGCCTCGAGGTTGGGGTCCCAAAAGTCAACCTCTTCAAGTGCCCCGCAAGATTCCGAAACTGAGCTTGAAACCTCGCCCAAAACCAAGAGACAGAAGCTTACTCCTACTACTCCGGAGGAAGCAAACCCAGATGGACAGCAAAGGATGTCTCATATTACCGTTGAACGCAACAGGAGAAAGCAAATGAACGAACACTTGTCCGTCTTGAGGTCACTCATGCCTTGCTTTTATGTCAAAAGAGGAGATCAAGCATCGATAATTGGAGGCGTGGTTGACTACATCAACGAGTTGCAGCAGGTGCTCCAAGCCCTGGAGGccaagaaacaaagaaaagtttACAGCGAAGTACTGAGCCCTAGGCTTGTTTCAAGCCCAAGGCCTTCACCACTGACTCTGAGTCCTCGGAAGCCACCTCTGAGCCCGAGACTGAACCTGCCCATTAGTCCAAGAACTCCACAACCGGGTAGCCCTTATAGGCCAAGGTTGCAGCCAGGCTACAACATTATTTCACCACCAATATCCAACTCTCTCGACCCTTCTCCCACTTCTTCCGCTTCCTCCATCAACGACAATATCAACGAGCTTGTTGCAAACTCCAAGTCCGCTGCTGCTGACGTGGAGGTCAAGTTTTCAGGCCCGCACGTGCTTCTGAAAACGGTGTCTCAACGAATTCCCGGGCAGGCCCTGAAGATAATAACGGCCCTTGAAGATCTTGCCCTCGAAATCCTCCATGTCAACATTAACTGTGCTGCTGATGATACCATGCTAAACTCATTCACTATCAAGATTGGAATTGAATGCCAACTCAGTGCCGAAGAACTCGCTCAACAAATCCAGCAAACATTCTGCTAA 1011 0.4886 MDDSLCDIFEDKEFGSDHFGGDDLFAILESLESDFTDFPPINEAVAVSKENEDASRLGSQKSTSSSAPQDSETELETSPKTKRQKLTPTTPEEANPDGQQRMSHITVERNRRKQMNEHLSVLRSLMPCFYVKRGDQASIIGGVVDYINELQQVLQALEAKKQRKVYSEVLSPRLVSSPRPSPLTLSPRKPPLSPRLNLPISPRTPQPGSPYRPRLQPGYNIISPPISNSLDPSPTSSASSINDNINELVANSKSAAADVEVKFSGPHVLLKTVSQRIPGQALKIITALEDLALEILHVNINCAADDTMLNSFTIKIGIECQLSAEELAQQIQQTFC 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2857 336 CDD bHLH_AtFAMA_like 102 173 - -
Ssu1g2857 336 Gene3D - 91 164 IPR036638 GO:0046983
Ssu1g2857 336 MobiDBLite consensus disorder prediction 183 212 - -
Ssu1g2857 336 Coils Coil 143 163 - -
Ssu1g2857 336 MobiDBLite consensus disorder prediction 57 74 - -
Ssu1g2857 336 MobiDBLite consensus disorder prediction 82 103 - -
Ssu1g2857 336 SMART finulus 105 156 IPR011598 GO:0046983
Ssu1g2857 336 Pfam Helix-loop-helix DNA-binding domain 100 151 IPR011598 GO:0046983
Ssu1g2857 336 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 99 150 IPR011598 GO:0046983
Ssu1g2857 336 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 98 173 IPR036638 GO:0046983
Ssu1g2857 336 PANTHER TRANSCRIPTION FACTOR FAMA 1 336 IPR044283 GO:0003700|GO:0010052
Ssu1g2857 336 MobiDBLite consensus disorder prediction 172 214 - -
Ssu1g2857 336 MobiDBLite consensus disorder prediction 42 103 - -
Ssu1g2857 336 PANTHER - 1 336 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2857 Ssu-Chr1 75627531 75631340 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2857 1 316 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G53210 54.749 5.20e-96 287
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ssu1g2857 HLH 7.5e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2857 K20558 - gmx:100777437 529.635