Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2856 ATGAACAACATGGGAGACCCAAACAGCATCATACATGAGCTACTACAAGGTTTGGAGTTGGCAAGGCAGCTCCAAGTGTATCTCCACATGCCTTCTTCGTCCCAAGAAACCCGTGACCTATTGATCCAAAAGATCATATCCACATTTGAAAAGGCACTTGAAATGGTAAATTGGAAAGGGCCAGTGCCAGCGGGTGAGTCATCACAACAGCCCCCAGGGGTTGCAGTCCGAATGTCAGACTCACCTTTGAGCAGTAGTCCCCGCAGTGAAGACTCCGATAGAGATTTGAAGGACCAGGACCACAATGCTTTCAAAAAGAGAAACACTTTGCCAAGATGGACAAAACAGATTCGAGTTACACCAGGAATGGGGGTGGAAGGGCCTCTTGATGATGGATATAGTTGGAGAAAATATGGCCAAAAAGACATCCTTGGAGCCATGTATCCGAGGGGTTATTACAGATGTACCCACAGAAATGTTCAAGGCTGCATGGCCACAAAGCAAGTGCAAAGATCTGATGAAGACCccactatttttgaaatcacATACCGAGGAAAGCACACCTGCACAGTGGCCAAGAACGTGGGTTCTTCATCAACTCCActagaaaaccaagaaccaagtcTGAACATAAATCctcagcagcagcagcagcagcagcagaaTATCCTGCAAAGCCTTGAGCAGCAGCAACCAAACGAACTACTTTTGAGCCTCCGGAAAGGATTGAGAGTCCAAACAGAGAACCTAGATTCCCCTGACAAATCATTTGCTCCATTCCGTTTCCCTTTATCAACAAACATCAAAACTGAAAGCCAAGTTTTCCCATCCCCTGTGCTTGAAAGCAACTATGCTGAAAACTTCAGTTCTCCTTCGTATATGTCCCCTGCTACATCGGGAATGAGCCACTTTTCGGTGTCTCCAAGTGGGGTGAACAGCTTTGGGGGGAACACAAATTTGGCAAGTTCTGGGTCTCAGATCAATGAAATGATCCCAGCTGTTACTTCAGCTGCAAACTCATCAACCGTTGGTTTGGAGTTTCCTTTTGAGCAGTTTGAATTTGATGGCCAGAACTTCACATTCGATAACCCACGATTTTTCTCTTGA 1107 0.4309 MNNMGDPNSIIHELLQGLELARQLQVYLHMPSSSQETRDLLIQKIISTFEKALEMVNWKGPVPAGESSQQPPGVAVRMSDSPLSSSPRSEDSDRDLKDQDHNAFKKRNTLPRWTKQIRVTPGMGVEGPLDDGYSWRKYGQKDILGAMYPRGYYRCTHRNVQGCMATKQVQRSDEDPTIFEITYRGKHTCTVAKNVGSSSTPLENQEPSLNINPQQQQQQQQNILQSLEQQQPNELLLSLRKGLRVQTENLDSPDKSFAPFRFPLSTNIKTESQVFPSPVLESNYAENFSSPSYMSPATSGMSHFSVSPSGVNSFGGNTNLASSGSQINEMIPAVTSAANSSTVGLEFPFEQFEFDGQNFTFDNPRFFS 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2856 368 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED 1 366 - -
Ssu1g2856 368 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 1 366 IPR044810 GO:0003700
Ssu1g2856 368 Pfam WRKY DNA -binding domain 130 189 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu1g2856 368 Gene3D WRKY domain 122 192 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu1g2856 368 MobiDBLite consensus disorder prediction 60 109 - -
Ssu1g2856 368 MobiDBLite consensus disorder prediction 87 107 - -
Ssu1g2856 368 SMART WRKY_cls 129 191 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu1g2856 368 ProSiteProfiles WRKY domain profile. 124 192 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu1g2856 368 SUPERFAMILY WRKY DNA-binding domain 128 190 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu1g2856 368 MobiDBLite consensus disorder prediction 72 86 - -
Ssu1g2856 368 MobiDBLite consensus disorder prediction 194 222 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2856 Ssu-Chr1 75614919 75616692 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2856 8 208 WRKY Transcription Factor Family AT5G24110 44.118 2.23e-52 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Ssu1g2856 WRKY 4.3e-27 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2856 - - gmx:100776906 584.719