Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2847 atgaaatatatatttcttctcCTTGTCACTTTCAAGattatcAAAAGGAAGTTCACAAAGCTTCAGGAGGCTATGGGGTTTCAAACATCACACAGCACTAAACGGGTACCACAGCAAATTTTCAAAGCACAGGAGGACTTAATTGATGCTCATGAAAACTCATTAATTGGAAGGTCCACTCTGAACTTGACTGATCGTACCCAAACCAATACCAAGTTCATTCTCTCTGGCTATGATTCATGGGTGGTGAGGCACCCTTCTGCATTGAACTCGTTTGATAGGTTGATGAAAGCCGCCACTGGGAAGAGGATCATCGTTTTTTTGGACTACGATGGTACCTTATCACCAATTGTAAATGACCCTGATCGTGCTTTCATGTCTGATGAgATGCGTGCAGCAGTATATGAAGTTGCTACTTATTTTCCAACAGCAATAATTAGCGGAAGAAGTAGAGATAAGGTAAAAGATTTCgtgaagttaaataatttatattatgctGGGAGCCATGGCATGGACATAATGGCACCATCAATGCCAGTTAGATCTTCTGACGGCAAGCTTTTTGACATTGCCCCTAACACAAATggCACTGAAGTTCCCTTTCAACCTGCGAAGAAGTTTTTGCCTGCAATTCGAGAGATATTAAGAAGACTAAAGAATGAagtaaaggaaataaaaggagCAATGGTAGAGGATAACGGATTCTGCATCTCTGTACACTTCCGGCAGGTCCAAGAAAAGGATTATGACGTTTTGGAAGAGAAAGTGAAGTCTGTGCTTGAAAATAATCCACAATTTTGCTTAACAGAGGGTAAAAAGGTGATGGAAATAAGGCCATCTATAAAGTGGAACAAAGGAAATGCTGTAGAATATTTTCTTGACACATTAGGATTAAGCAGTTGCACTGATATCCTTCCTGTGTATATTGGTGATGATAGAACTGATGAAGATGCTTTTAAGGTCATACAGAATAGAGGGCAAGGTTATCCAATTATAGTGTCTTCAATTCCAAGAGAAACTAACGCTTTCTACTCTTTGCGTGACCCATCGGAAGTACTAATCTTTTTGTCACGGCTGGCAAAATGGAGGAAAACCTCTCTCTATAGCAGGCCTTTAAATTTTGGTTAA 1128 0.3785 MKYIFLLLVTFKIIKRKFTKLQEAMGFQTSHSTKRVPQQIFKAQEDLIDAHENSLIGRSTLNLTDRTQTNTKFILSGYDSWVVRHPSALNSFDRLMKAATGKRIIVFLDYDGTLSPIVNDPDRAFMSDEMRAAVYEVATYFPTAIISGRSRDKVKDFVKLNNLYYAGSHGMDIMAPSMPVRSSDGKLFDIAPNTNGTEVPFQPAKKFLPAIREILRRLKNEVKEIKGAMVEDNGFCISVHFRQVQEKDYDVLEEKVKSVLENNPQFCLTEGKKVMEIRPSIKWNKGNAVEYFLDTLGLSSCTDILPVYIGDDRTDEDAFKVIQNRGQGYPIIVSSIPRETNAFYSLRDPSEVLIFLSRLAKWRKTSLYSRPLNFG 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2847 375 Coils Coil 242 262 - -
Ssu1g2847 375 TIGRFAM T6PP: trehalose-phosphatase 101 361 IPR003337 GO:0003824|GO:0005992
Ssu1g2847 375 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 57 369 - -
Ssu1g2847 375 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 57 369 IPR044651 GO:0004805|GO:0005992
Ssu1g2847 375 Gene3D - 184 370 IPR023214 -
Ssu1g2847 375 Gene3D - 104 183 IPR023214 -
Ssu1g2847 375 CDD HAD_TPP 106 352 - -
Ssu1g2847 375 Pfam Trehalose-phosphatase 107 350 IPR003337 GO:0003824|GO:0005992
Ssu1g2847 375 SUPERFAMILY HAD-like 105 363 IPR036412 -
Ssu1g2847 375 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 105 323 IPR006379 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2847 Ssu-Chr1 75405334 75409130 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2847 102 360 Trehalose Biosynthesis Gene Families AT1G23870 27.037 3.98e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2847 K01087 - gmx:100819120 672.159