Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2846 ATGATGGAGTGCAACAAAGATGAGGCAGTTAGGGCCAAAGAAATAGCAGAGAGGAAATTTTCCGAAAGGGAATATGTTGGTGCAAAGAAGTTTGCTCTCAAGGCTCAAAATCTGTATCCTGATTTGGAGGATATTTCCCAGCTTTTGACaacaattgatatttatatatctgCTGAGAATAAAGTAAGCGGAGAAATGGATTGGTACGGTATACTTGGAGTGAGCCCCTTTGCTGATGAGGAGACTGTCAGAAAGCAATACAGGAAGCTGGCTCTCACCCTTCACCCTGACAAAAACAAGTCTTTAGGTGCAGAGGGTGCATTTAAGCTGGTTTCAGAGGCATGGAGTTTGTTATCAGATAAGACCAAGAGACTAGAATATAACCAGAAGAGGAGTTTGAAAGGATTCCAACATAATACTCCTAACCGTATTGGATCTCAATCAGATGCACCCAGTTCAaatggtttttataatttaaagaagaATATAACTTCAAATGTGGGGACTGGAAATAATAATGGTCGGCCACCTTCAACTCCAGTTCCTCCTCCCCATAAAAAGGCTGAAACCTTTTGGACTATCTGTAATCGGTGCAGGACACATTATGAATATCTCAGAATTTATTTGAATCACACCCTTTTATGTCCAAACTGTAATGAAGCTTTTGTTGCTGTAGAGAGGGGTCCACCACCAAATGTTTTTAAGCCATCAAATTGGTCTTCTCATCAACGTCATCAGAGTTCTCAACACCATACTGGTAGTAATAATACAAACTTTCAGTGGGGTTCTCACTCTAAAATGGCTGCTTTTGGTGGCAAAGATGGATCAACATCTGTTGCAGCTCAAGCTGCAAGTGTTGTGCAGCAGGCAAGTGAGAAAGTAAGGAGAGAGGGTTCTTTTCACAAAGCTGAAAAACCTATGAAAAAAAGGAGGACAGATGATATTCGCATTAATGGTTATCAAGGATACATGGCAAATCATATGGCTACGGGACATGGAGCAGCTGGTTTGGGCAGCTTTTCTGAATCAGGAAAGGCTAACTTGGAAACAGAAAGGAATTATGGTTTTTCAGGTCTTCCTGGCAAGCATTACAGCACAAGAGAATTGTCAATGTTTGAAATACGAAACATGTTGATGGATAAGTCGCGCATTGAAATTCGTAAGAAACTTCAAGAATGGAAATCAATGGCTGAAGCTAAGGTTAACAAGGACAAAGAGAATAAGAGACAGAAAAGCACATTTAATGGCAAAACAACTGGTTCAGAGAAGCTTAGGGAGCCCCCAGTTAATGGTAACAGGCATCCGGGCATTGCTTTTGCAATCAGATCTGATGATACAGTTAAGAAGAACCAAACTTATGTTACAATCAATGTTCCAGACCCTGATTTTCACAATTTTGACTTGGACAGAGATGAAAATTCCTTTGCAGAGGACCAGGTCTGGGCTgcttatgatgatgatgatggaatGCCTCGATATTATGCTAGAATTCACAAGGTGATCTCCATAAAGCCATTTAAAATGCGGATCAGTTGGCTTAACTCTCGAAGCAACAGTGAATTGGGCCCAATAGATTGGGTAGGTTCtggtttttataaaacttgTGGGGATTTCAGAACTGGCAAGCATGAAATAACTGAATCATTAAATTCATTCTCTCACAAGGTTAGGTGGACAAAAGGTACGAGAGGTGTTGTTCGTATCTTTCCTGGAAAGGGGGAAGTCTGGGCTCTTTATAGAAACTGGTCTCCTGATTGGAATGAACATACCCCAGATGAAGTGATACACAAGTATGATATGGTGGAGGTGCTTGAAGATTTCAATGAAGAACAAGGCATATTAGTTACCCCCCTTGTTAAGGTTGCTGGTTTTAGGACTGTGTTTCAAAGGCACACGGACCATGATCAGGAGAGGAGGATTGTTAAACAGGAAATGTTTCGATTCTCTCATCAGGTTCCTAATTACTTGCTTACTGGCCAAGAAGCTCATAATGCTCCAAAGGGTTGTCGAGAGTTGGATCCAGCCGCTACTCCTTTAGATCTCCTTCAGATGAGGACAGAAGCTAATGAGACATCGGATAATGCTTAG 2088 0.4004 MMECNKDEAVRAKEIAERKFSEREYVGAKKFALKAQNLYPDLEDISQLLTTIDIYISAENKVSGEMDWYGILGVSPFADEETVRKQYRKLALTLHPDKNKSLGAEGAFKLVSEAWSLLSDKTKRLEYNQKRSLKGFQHNTPNRIGSQSDAPSSNGFYNLKKNITSNVGTGNNNGRPPSTPVPPPHKKAETFWTICNRCRTHYEYLRIYLNHTLLCPNCNEAFVAVERGPPPNVFKPSNWSSHQRHQSSQHHTGSNNTNFQWGSHSKMAAFGGKDGSTSVAAQAASVVQQASEKVRREGSFHKAEKPMKKRRTDDIRINGYQGYMANHMATGHGAAGLGSFSESGKANLETERNYGFSGLPGKHYSTRELSMFEIRNMLMDKSRIEIRKKLQEWKSMAEAKVNKDKENKRQKSTFNGKTTGSEKLREPPVNGNRHPGIAFAIRSDDTVKKNQTYVTINVPDPDFHNFDLDRDENSFAEDQVWAAYDDDDGMPRYYARIHKVISIKPFKMRISWLNSRSNSELGPIDWVGSGFYKTCGDFRTGKHEITESLNSFSHKVRWTKGTRGVVRIFPGKGEVWALYRNWSPDWNEHTPDEVIHKYDMVEVLEDFNEEQGILVTPLVKVAGFRTVFQRHTDHDQERRIVKQEMFRFSHQVPNYLLTGQEAHNAPKGCRELDPAATPLDLLQMRTEANETSDNA 695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2846 695 Pfam Domain of unknown function (DUF3444) 455 661 IPR024593 -
Ssu1g2846 695 SMART dnaj_3 66 123 IPR001623 -
Ssu1g2846 695 Gene3D DnaJ domain 64 174 IPR036869 -
Ssu1g2846 695 CDD DnaJ 67 120 IPR001623 -
Ssu1g2846 695 MobiDBLite consensus disorder prediction 136 175 - -
Ssu1g2846 695 PANTHER BNAC03G44070D PROTEIN 2 690 - -
Ssu1g2846 695 MobiDBLite consensus disorder prediction 294 310 - -
Ssu1g2846 695 MobiDBLite consensus disorder prediction 136 185 - -
Ssu1g2846 695 MobiDBLite consensus disorder prediction 401 435 - -
Ssu1g2846 695 PANTHER HEAT SHOCK PROTEIN-LIKE 2 690 - -
Ssu1g2846 695 Pfam DnaJ domain 67 128 IPR001623 -
Ssu1g2846 695 MobiDBLite consensus disorder prediction 290 310 - -
Ssu1g2846 695 MobiDBLite consensus disorder prediction 234 264 - -
Ssu1g2846 695 ProSiteProfiles dnaJ domain profile. 67 131 IPR001623 -
Ssu1g2846 695 ProSitePatterns Nt-dnaJ domain signature. 108 127 IPR018253 -
Ssu1g2846 695 PRINTS DnaJ domain signature 69 87 IPR001623 -
Ssu1g2846 695 PRINTS DnaJ domain signature 103 123 IPR001623 -
Ssu1g2846 695 PRINTS DnaJ domain signature 87 102 IPR001623 -
Ssu1g2846 695 MobiDBLite consensus disorder prediction 233 274 - -
Ssu1g2846 695 SUPERFAMILY Chaperone J-domain 58 127 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2846 Ssu-Chr1 75369051 75371138 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2846 5 230 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 31.197 6.67e-30 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2846 - - gmx:100814722 1297.72